Basic Information

Insect: Altica viridicyanea
Gene Symbol: SCRT1
Assembly: None
Location: GWHAMMQ00000192:165122-168784[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00075 0.024 15.1 0.7 1 23 320 342 320 342 0.95

2 12 6.3e-05 0.002 18.5 1.6 1 23 350 372 350 372 0.99

3 12 6.7e-05 0.0021 18.4 0.2 2 23 380 401 379 401 0.96

4 12 1.2e-05 0.00037 20.8 0.4 1 23 407 429 407 429 0.98

5 12 3.4e-05 0.0011 19.3 2.6 1 23 436 458 436 458 0.99

6 12 0.00012 0.0038 17.6 0.4 1 23 464 486 464 486 0.96

7 12 2.6e-05 0.00082 19.7 0.1 1 23 492 514 492 514 0.98

8 12 1.6e-06 4.9e-05 23.5 1.2 1 23 520 543 520 543 0.96

9 12 0.00015 0.0049 17.3 0.8 1 23 549 572 549 572 0.96

10 12 1.1e-05 0.00034 20.9 2.1 1 23 578 600 578 600 0.99

11 12 0.00024 0.0075 16.7 0.4 1 23 606 628 606 628 0.94

12 12 0.014 0.45 11.1 0.2 1 22 634 655 634 658 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00075	0.024	15.1	0.7	1	23	320	342	320	342	0.95
2	12	6.3e-05	0.002	18.5	1.6	1	23	350	372	350	372	0.99
3	12	6.7e-05	0.0021	18.4	0.2	2	23	380	401	379	401	0.96
4	12	1.2e-05	0.00037	20.8	0.4	1	23	407	429	407	429	0.98
5	12	3.4e-05	0.0011	19.3	2.6	1	23	436	458	436	458	0.99
6	12	0.00012	0.0038	17.6	0.4	1	23	464	486	464	486	0.96
7	12	2.6e-05	0.00082	19.7	0.1	1	23	492	514	492	514	0.98
8	12	1.6e-06	4.9e-05	23.5	1.2	1	23	520	543	520	543	0.96
9	12	0.00015	0.0049	17.3	0.8	1	23	549	572	549	572	0.96
10	12	1.1e-05	0.00034	20.9	2.1	1	23	578	600	578	600	0.99
11	12	0.00024	0.0075	16.7	0.4	1	23	606	628	606	628	0.94
12	12	0.014	0.45	11.1	0.2	1	22	634	655	634	658	0.92

Sequence Information

Coding Sequence: ATGCCTTCAAGTAGCGATATCTGTTTGGTATGTAATATCGGGTGTGTTCCCAATTTAGATTACATCGAAATATTCAGCAAAGATATACCAACAGAATCTGATTTACATATTGCCTCTTTAGTTGATAAGTTACTGGATAAAAAATTAAAACCAGATCCAAACACTCTGCAGCTTATTTGTAAAAAATGTTTCACTCTAATTACTGAACTGCAAGAACTGCAGTCTCGAGTGGCGGAAATAAAAAGTGAAATATTGGATAATCATGGTGATGATATAAAACAAGAATATTTCTCTCAAGATGAGGAACCAGAAACTAAACAGGAAGAAGGGGACAAAGAAAATCAAAGCCCAAAGAAATTGTTGTTTATTCCATCGTCAGATGAAGATTCTTCACAGATCGCAAGTGAGAAAACCACTTTTGAAGATATAAATGTAGAGTTAGCTAGAGTACACGCTTTTACTGATCCAGATGACCAACAAAGAGATAATGACGATATGGAAATTGATGCTAATATTGAGTATCAGAATTTTTCAACCGATGAAGGAGAAATTTTGGATTCTGGTGCGATAGAACACTCATCTGATTCTGAATATGAACCCGATTCTTATATGAAACATCATAGTTATGTAGAAATTCCTGTTGGCGAAAAAGATGATGGTTCTATTTCTGAAGTAACATTGAATCTAGACCATTCTAATCTTGAAGTAGGAACTATAAAAAATTCAATTTCTGTTAACTCTGAAAAGAGACCAATAATTCTTAGAAAAAAAAATTCGTCTACAACTGCAATAGAATTATGTAACGATGAAGAAAATAATCCAGATTCGGTTGCTTTACCTGTAGTTTCACGTGAAGGTAATTTATACACTTGCCTCCTTTGTGAGGGCGACGAAACAGTTGCAGGAGAGACAAAAGCTATTGTAGCACACGTTAAAGATGCCCATAATGTCCGATTATATATCTGTGATGTATGCGGTCAAGATTTTTGTAAAAGAAACCAATTGTCAGCTCATTTAGATGAACATGTCGCTGCTGAGGATGGAGATTTTCAATGTGAAGTTTGTAATAGAATCTTCAGTAATTTGAGATTGTTTCGAATACATAAACGAATGCATTATCCACAGAGTAAAGCTTGGGTTTGCGATACTTGTGGGAAGAAATATAGTAGCAAAAATCTGCTTGAGGAACACGTTAATAGTCATTTAGGAGTGCGTCCTTATATATGCGGAATTTGTGGCAAAGATTTCGCTAGTAAATATACATACAAAGCACACGAAAAAACTCACCAAGTGCGACCGAGACCATTTAAATGTTCTCAGTGCGATAAATCATTTTTGAGTCAACAAAATCTCACTCAACACGAACGTACTCATCTCGGTATGAAAGAATATTCATGCCAATTATGTGGAAAACAATTTGGGTCAGCTCATAATTTAGAAGTACATTCAATCGTCCACACTGGTTATAAACCTTTTGTATGTGGATTGTGTGGAAAAGCTTTTGCAAGGAAAGCTGAAATTAGAGATCATGAAAGAACTCACACAGGCGAGAGACCATATCAGTGTGAATTTTGTGGTGCAACATTCAGTCAACGTTCAAATTTACAATCTCATAAAAGAGCTACTCATTATGATGACAAACGTTACCAATGTACGGTTTGTAGTAAAGGATTTAAACGGAGACGTCTTTTAGATTATCATATTAAAGCAGCTCACACAGGAGAGCGACCATTTAAATGTGAGGTTTGTGATGCAACATTTGTCTATCCAGAACATTTTAAAAAGCACCGTAGAATTCATACCGGTGAAAAACCCTTTCTTTGCGAAGTTTGTGGGAAGGCCTTTAACAGTAGAGATAATCGGAACGCTCACAGATTTGTACATTCTGATAAAAAACCATACGAATGTTTAGTATGTGGATCTGGTTTTATGAGAAAACCATTGTTATATCAACATATGCAACAAAGAGGTCATCTAAATGACACCATCGTGGTAAATCAACCTAGATTAACCACTGAAGATGATCAGTTAGTGAGTGTTAATGCTGCTGGAGACATGGAAATCATTGATGCTTCTTCAGCTGATGGAAAATTGTATATTCAAGATCAAGATGGTAATGAACATATAATAATTGATGGACAACAAATTAGTTTCACTCAAGTTGGTAGCGAAGAAGAGAGTGAAGAAATTATTGACGAAATAGAACAGGTGGTTACTGATCAAACTGATGACGATTACGAAGAAATCATCACTGGTGATGCATTAGCAAGTGGAGAAACGCAAATTATTGAAACTCCAGAAGGACCTATTCAGTTGGTTAAAGTAAGGATACCAAATGAAAATGGGGAAGAAGAAGAAGCCTGGATTAAAATTGTTCCTGAATAA
Protein Sequence: MPSSSDICLVCNIGCVPNLDYIEIFSKDIPTESDLHIASLVDKLLDKKLKPDPNTLQLICKKCFTLITELQELQSRVAEIKSEILDNHGDDIKQEYFSQDEEPETKQEEGDKENQSPKKLLFIPSSDEDSSQIASEKTTFEDINVELARVHAFTDPDDQQRDNDDMEIDANIEYQNFSTDEGEILDSGAIEHSSDSEYEPDSYMKHHSYVEIPVGEKDDGSISEVTLNLDHSNLEVGTIKNSISVNSEKRPIILRKKNSSTTAIELCNDEENNPDSVALPVVSREGNLYTCLLCEGDETVAGETKAIVAHVKDAHNVRLYICDVCGQDFCKRNQLSAHLDEHVAAEDGDFQCEVCNRIFSNLRLFRIHKRMHYPQSKAWVCDTCGKKYSSKNLLEEHVNSHLGVRPYICGICGKDFASKYTYKAHEKTHQVRPRPFKCSQCDKSFLSQQNLTQHERTHLGMKEYSCQLCGKQFGSAHNLEVHSIVHTGYKPFVCGLCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYQCTVCSKGFKRRRLLDYHIKAAHTGERPFKCEVCDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGSGFMRKPLLYQHMQQRGHLNDTIVVNQPRLTTEDDQLVSVNAAGDMEIIDASSADGKLYIQDQDGNEHIIIDGQQISFTQVGSEEESEEIIDEIEQVVTDQTDDDYEEIITGDALASGETQIIETPEGPIQLVKVRIPNENGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00387446;
90% Identity: -
80% Identity: -