Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000083:176666-184315[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00043 0.013 15.9 2.4 1 23 114 136 114 136 0.99

2 16 0.0077 0.24 11.9 0.5 2 23 142 163 142 163 0.98

3 16 0.00013 0.004 17.5 5.2 1 23 169 191 169 191 0.97

4 16 1e-05 0.00031 21.0 1.7 1 23 197 219 197 219 0.97

5 16 0.073 2.3 8.9 0.7 1 23 226 248 226 248 0.97

6 16 5e-05 0.0016 18.8 0.2 2 23 255 276 254 276 0.97

7 16 0.0014 0.044 14.2 1.1 1 23 281 304 281 304 0.97

8 16 0.012 0.38 11.3 0.4 3 23 309 330 307 330 0.94

9 16 5.2e-05 0.0016 18.7 0.4 2 23 336 358 335 358 0.95

10 16 1.4e-06 4.5e-05 23.7 0.4 2 23 366 387 365 387 0.98

11 16 1.4e-06 4.5e-05 23.7 0.8 1 23 391 413 391 413 0.96

12 16 0.0013 0.042 14.3 1.7 1 23 419 441 419 441 0.99

13 16 0.021 0.67 10.5 4.5 1 20 447 466 447 469 0.93

14 16 0.0004 0.013 16.0 3.8 1 23 475 497 475 497 0.98

15 16 0.0062 0.2 12.2 5.2 1 22 503 524 503 527 0.90

16 16 0.0026 0.081 13.4 0.1 1 23 534 557 534 557 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00043	0.013	15.9	2.4	1	23	114	136	114	136	0.99
2	16	0.0077	0.24	11.9	0.5	2	23	142	163	142	163	0.98
3	16	0.00013	0.004	17.5	5.2	1	23	169	191	169	191	0.97
4	16	1e-05	0.00031	21.0	1.7	1	23	197	219	197	219	0.97
5	16	0.073	2.3	8.9	0.7	1	23	226	248	226	248	0.97
6	16	5e-05	0.0016	18.8	0.2	2	23	255	276	254	276	0.97
7	16	0.0014	0.044	14.2	1.1	1	23	281	304	281	304	0.97
8	16	0.012	0.38	11.3	0.4	3	23	309	330	307	330	0.94
9	16	5.2e-05	0.0016	18.7	0.4	2	23	336	358	335	358	0.95
10	16	1.4e-06	4.5e-05	23.7	0.4	2	23	366	387	365	387	0.98
11	16	1.4e-06	4.5e-05	23.7	0.8	1	23	391	413	391	413	0.96
12	16	0.0013	0.042	14.3	1.7	1	23	419	441	419	441	0.99
13	16	0.021	0.67	10.5	4.5	1	20	447	466	447	469	0.93
14	16	0.0004	0.013	16.0	3.8	1	23	475	497	475	497	0.98
15	16	0.0062	0.2	12.2	5.2	1	22	503	524	503	527	0.90
16	16	0.0026	0.081	13.4	0.1	1	23	534	557	534	557	0.90

Sequence Information

Coding Sequence: ATGGAAATTGTGAAAAAAGAAACTGATTACAACCAAGAAGATTGTTCCGCATCAACAGAATCATCTTTATATGGTATAAATGTACCATGCTTATCCCATCAAATTGAAATCAAACAGGAACATGACGAAACTCCAGTAATAAAAAATGAAATCGATATGTGTTCCGACGATGAATCAATTCCAATTAAACAAGAACATGAAAGTGTTGAGATGACTGTTAATAATGAAAATACAAACTGTATTCCTATAGATAGTAGTCCTAAAACTTCATTACCTTCTACTCAAGACAATAAAATGTTGGAAATACAAAAAACTGTAACTGAAAATGAAACTACTGTGTATAGATGCCCAATGTGTGATGAAATATTTAAAAAATTGACTACTTATAAGGAGCATAAAAAGAAACATTACATTGAAAAACGAAGGTGCAATCTTTGTAATAAAGTACTTCAGAGTATTGGCAAATTAGAGGAACATATGAATAAACATTTAGGACTAAAACCGTACAAATGTGACGAATGTGATAAATCATTCGTAACAAAACATCATGTAAAGTTACACAAAGATTCTCACAGCACTGAGTTTAGATATACGTGTAAGCGTTGTCCTAAACAATTTAGAACCAAAGGATCTCTAAGAAGTCACCAAGTTGTTCATAACGTAAATACCGAAGAGTTTAAATGCAAGGTTTGTAGTGTCGATTGCCAGGATGCTGCTACTTACAAGGCGCACATTTCTGAACATGGAAAGAAAGAAGAAATTCAATGTGGGGTTTGCAATAAAACATTTAAAACCGATCGTGGATTGGAAGCCCATTTAAGCACACATAAGGAACTAAAGTTTCCTTGTGAATATTGTGGTAAAATTTATAATTCAATGTATAGAATCAAACGCCATACCAAAAGAGCTCATGCACCAATCAATTGTGAGGAATGTAATGAGATATTTTATGAAAGAGCTTTATACACAAAACATAGAAAGGAACAACACAGCATTAAACATTGGGAGTGTGAATATTGTCAGAAAGTGTTTGATAAACAGAAAAATGTAACTGAACACATTCGACTTCAACACAAACAGGATGGGGAAATGAAGAAGTGTCCAATATGTGATAAAGAGTTTATTAATAACGCTTTATTAAAAAACCATGTAAAAACCCACGATAAAACATTCCAGTGTACTATTTGTAGGAAAGTATTTTCAAATAGGAGCAACTTAGAGATACATTCCGTTACACATTCAGGCGCAAAAAATTACCAATGTGAGATTTGTTTGAAATACTTTGCATCCAAGACAAGTGTGAAATATCATCGGTTAACACATACTGACGAAAGAAATTTCCAATGTGATCTTTGTGATAAAAACTTTAAAACTAATAGGCGGTTGTACGTACACAAATTATGTCATGCAACAGAAGAAAAGTTCGAGTGTGAAGTGTGCCATCAAAGATTTAGGGTTAAGCAGTACCTTAGACTCCATATGTACCGCCATTCAAAAGTGAAACCATTTGAATGCGAAGTCTGTCACAAACGTTTTAAACACAAGAAGACGAGAGACAAGCATATGGCTAAAGGCAATCATAAACAAATAGAGAATGCACACGACTGTAGTTTTTGTGATGAGACATTTGCAACCCCCGAACTGTTACTCGAACATGTTGAAGCTAGTCATTCTGAAGAAAGTTCTTTTAATGATATGAATGAATATGCCGGTGAAAATATGGACGTAGACGATGATTACGTTGATAAAAGTGAAAAGATTGCTATTAACAATATCGACAAAGAAATTTTTGAATATTCACAGGTGGCCAGTTAA
Protein Sequence: MEIVKKETDYNQEDCSASTESSLYGINVPCLSHQIEIKQEHDETPVIKNEIDMCSDDESIPIKQEHESVEMTVNNENTNCIPIDSSPKTSLPSTQDNKMLEIQKTVTENETTVYRCPMCDEIFKKLTTYKEHKKKHYIEKRRCNLCNKVLQSIGKLEEHMNKHLGLKPYKCDECDKSFVTKHHVKLHKDSHSTEFRYTCKRCPKQFRTKGSLRSHQVVHNVNTEEFKCKVCSVDCQDAATYKAHISEHGKKEEIQCGVCNKTFKTDRGLEAHLSTHKELKFPCEYCGKIYNSMYRIKRHTKRAHAPINCEECNEIFYERALYTKHRKEQHSIKHWECEYCQKVFDKQKNVTEHIRLQHKQDGEMKKCPICDKEFINNALLKNHVKTHDKTFQCTICRKVFSNRSNLEIHSVTHSGAKNYQCEICLKYFASKTSVKYHRLTHTDERNFQCDLCDKNFKTNRRLYVHKLCHATEEKFECEVCHQRFRVKQYLRLHMYRHSKVKPFECEVCHKRFKHKKTRDKHMAKGNHKQIENAHDCSFCDETFATPELLLEHVEASHSEESSFNDMNEYAGENMDVDDDYVDKSEKIAINNIDKEIFEYSQVAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -