Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000060:304613-318472[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.8e-05 0.0015 18.8 0.3 1 23 187 209 187 209 0.98

2 12 0.00028 0.0087 16.5 0.9 1 23 215 237 215 237 0.98

3 12 4.3e-05 0.0013 19.0 3.2 1 23 243 265 243 265 0.98

4 12 0.00029 0.0089 16.4 1.4 3 23 279 299 277 299 0.95

5 12 0.0007 0.022 15.2 0.2 2 23 306 327 305 327 0.96

6 12 1.6e-06 4.9e-05 23.5 0.7 1 23 333 355 333 355 0.99

7 12 7.7e-07 2.4e-05 24.5 0.5 1 23 361 383 361 383 0.99

8 12 3.9e-06 0.00012 22.3 0.1 1 23 389 411 389 411 0.99

9 12 6.5e-07 2e-05 24.7 1.3 1 23 417 439 417 439 0.99

10 12 6e-06 0.00019 21.7 0.8 1 23 445 467 445 467 0.98

11 12 9.4e-05 0.003 17.9 4.1 2 23 474 495 473 495 0.93

12 12 0.0035 0.11 13.0 1.3 1 23 501 522 501 522 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.8e-05	0.0015	18.8	0.3	1	23	187	209	187	209	0.98
2	12	0.00028	0.0087	16.5	0.9	1	23	215	237	215	237	0.98
3	12	4.3e-05	0.0013	19.0	3.2	1	23	243	265	243	265	0.98
4	12	0.00029	0.0089	16.4	1.4	3	23	279	299	277	299	0.95
5	12	0.0007	0.022	15.2	0.2	2	23	306	327	305	327	0.96
6	12	1.6e-06	4.9e-05	23.5	0.7	1	23	333	355	333	355	0.99
7	12	7.7e-07	2.4e-05	24.5	0.5	1	23	361	383	361	383	0.99
8	12	3.9e-06	0.00012	22.3	0.1	1	23	389	411	389	411	0.99
9	12	6.5e-07	2e-05	24.7	1.3	1	23	417	439	417	439	0.99
10	12	6e-06	0.00019	21.7	0.8	1	23	445	467	445	467	0.98
11	12	9.4e-05	0.003	17.9	4.1	2	23	474	495	473	495	0.93
12	12	0.0035	0.11	13.0	1.3	1	23	501	522	501	522	0.94

Sequence Information

Coding Sequence: ATGGATATGAGCATGTATTTAACTGCACCTCTACAAATTGATAGAATTTGTAGAGCATGTTTAACAGAAAAAGGAGATATGAGACCATTGTTTGGAGCCTGTTTAGATGAAATGCTAAATTCTTTCGCCTCCATTCAGGTATCTGAAAATGATGGTTATCCTCATCTTATGTGTGTACAGTGTGTTTTACAATGCAGCAGAGCTTACACATTTAAACAACAATGTGAAAAATCTGATAATATTTTACGCCAATATCTCTCACCTGAATTTCAGCATCAATTGGCAGAATCTTTAGCGGAAAAACAAAGAGAGCAAGCCAAGCATGAATTACAAGAGCAATTACAATTTTCCGATCATATTACTACTGTGATAGCAATAGAACAAGATATTCCTGAATTTGTTACATACACAGAAGCTGATGCGCTTGATGCGAAAGAAAGTCTTTATACCATTGAAACTACTCCAGTAGATCAAACTGGTACTGGATTAACTGATGAACTTAATAATGAAATAGTTTTACAACTTGAAGAAAAACCTGATACCAATGCAAAATTAAAATATGCTTGCACAAAATGTGAAGCCTCTTTTACCTTAAAAGTAGATCTAAAAGTCCACATGATGTCACATCCAAAAGATCTAAACTTCGAATGTCACGTTTGTGAAAAAGCATTTTCCGAAGCTCGAATATTAAAACGTCATCTTAAGATTCATTTACAACAAAAACCTCATCAATGCGACCAATGTGATATGACATTTGCAGAAAGTTCTAATTTAAGTAAACATAAGAAAAAACATACCGGGGAGTTGAGGAATATCAAAGGAAAACCACATTTATGTTCAGTTTGTGGTAGAGCTTTTAAGTGGGCTTCAAGTTTATCTAAACATATGAAGTATCATACTGGACATAAATTGTTGTCGTGCGAGTATTGTGATAAGCAGTATGTTGAGGCCCGTAGTCTAAGGATTCATCTTAGTTCTCATACTGGTGAACGTCCTTACGTATGTGAAATTTGTGAAAAAGGTTTTACACAAATTTGTAATCTAGAAAAACATATCAGAGTTCATACTGGTGAAAAACCATTCCAGTGCCCTATATGTAATAAAAGATTTACACAATCTGGTTATGTAGGTATTCATATGAGAACCCATACAGGTGCTAGGCCTTATGTTTGTGGTACATGTGGAAAAGCATTTGCAGCTTCGAGTACATTAAATATTCATCAAAATACTCATACTGGTGAAAAACCGTATACTTGCCAAGTTTGTAATAAATCGTTTAGTAGACAAGAAACACTTATTATTCATAATAGAACACATACTGGTGAAAAACCACATGTTTGTAATGTGTGTAATAAAGGATTTACAAGTTCTGGATTGCTATCTGGTCATATGAGAAGTCATACTGGAGAAAAACCACATGCTTGTGAATGTTGTGATAAAAAATTTGCCAGTTCAAGCAGCTTAAAAGTTCATATGAGATCTCATACAGGAGATAAATCGTTTGCTTGCAATATTTGCCATAAAACTTTTGCACAATCTGTATTTCAGCAACATATAGCAACACATAAAAATGAATTAAAAGTAGAAAGCGTACATACTGTTACTCTACCGGAACTTCTAACTGTAGACAATCAACCTATCCAAGTACAAGCAATATCCACGATTTAA
Protein Sequence: MDMSMYLTAPLQIDRICRACLTEKGDMRPLFGACLDEMLNSFASIQVSENDGYPHLMCVQCVLQCSRAYTFKQQCEKSDNILRQYLSPEFQHQLAESLAEKQREQAKHELQEQLQFSDHITTVIAIEQDIPEFVTYTEADALDAKESLYTIETTPVDQTGTGLTDELNNEIVLQLEEKPDTNAKLKYACTKCEASFTLKVDLKVHMMSHPKDLNFECHVCEKAFSEARILKRHLKIHLQQKPHQCDQCDMTFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLSCEYCDKQYVEARSLRIHLSSHTGERPYVCEICEKGFTQICNLEKHIRVHTGEKPFQCPICNKRFTQSGYVGIHMRTHTGARPYVCGTCGKAFAASSTLNIHQNTHTGEKPYTCQVCNKSFSRQETLIIHNRTHTGEKPHVCNVCNKGFTSSGLLSGHMRSHTGEKPHACECCDKKFASSSSLKVHMRSHTGDKSFACNICHKTFAQSVFQQHIATHKNELKVESVHTVTLPELLTVDNQPIQVQAISTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912434;
90% Identity: -
80% Identity: -