Avir004779.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000182:344078-363672[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.0013 0.041 14.3 0.5 2 23 66 88 65 88 0.95
2 21 0.21 6.5 7.4 0.1 1 23 113 135 113 135 0.97
3 21 3.9 1.2e+02 3.4 0.1 1 23 140 162 140 162 0.90
4 21 0.049 1.5 9.4 1.8 1 23 168 191 168 192 0.95
5 21 0.00017 0.0053 17.1 3.2 1 23 197 219 197 219 0.98
6 21 1.6 51 4.6 0.8 1 23 225 248 225 248 0.92
7 21 1.3e-05 0.0004 20.7 1.3 2 23 260 282 259 282 0.96
8 21 0.00011 0.0034 17.7 2.0 3 23 296 316 294 316 0.96
9 21 5.6e-05 0.0017 18.6 0.9 1 23 322 344 322 344 0.98
10 21 1.7e-06 5.4e-05 23.4 0.2 1 23 350 372 350 372 0.99
11 21 2 64 4.3 1.1 2 23 471 493 470 493 0.95
12 21 0.54 17 6.1 0.1 1 23 512 535 512 535 0.96
13 21 0.0021 0.064 13.7 2.3 1 23 539 561 539 561 0.99
14 21 0.003 0.095 13.2 2.1 1 23 567 590 567 590 0.98
15 21 0.0065 0.2 12.1 0.4 1 23 596 618 596 618 0.88
16 21 0.0038 0.12 12.9 1.0 1 23 624 647 624 647 0.95
17 21 0.00082 0.026 15.0 0.7 2 23 659 681 658 681 0.96
18 21 4.2e-05 0.0013 19.0 1.0 3 23 694 714 692 714 0.96
19 21 6.8e-05 0.0021 18.4 1.4 1 23 720 742 720 742 0.97
20 21 6.1e-07 1.9e-05 24.8 0.5 1 23 748 770 748 770 0.98
21 21 0.17 5.5 7.7 0.1 1 21 776 796 776 797 0.95

Sequence Information

Coding Sequence
ATGACTACTTTTTCAGAAATCCAAAATTCTAAGATTTTAATCAAATTTTGTATTAATCGAGAATGGAACGGAGCAAAAAAATCCAACAGAAAAAAATCAACTCCAAGCAAACGAGGTAGAAAAACATCAACAGCATCAACAACACCAAAAAAATACGTTCACAAACTAAAACCAAATCACAAAGCAAGAGCGTGGGTATGCAAAATATGCTTCGAAGAATTTGAAACTCGAAAAAATTTATTCGATCACAGAAAATTAGTTCATGAAGATATCGATGATATAATTAAAAAAGAAGATTTAGTAGAAAAATATACTTTCGATGTAGTATTGGAGTGTTATACGTGTTCTAATTGTTCAGCAGAATTTCAAATTAAAGAAGAAGTGGAAAAACATGTAGAAATGCACGAAGAGGAGAAATACGATTGCCAAATCTGCAATATAACATTATACGGTGCCTTAGTGTATTCCGCACATATGCAACAACATCGCGAAGATAAAAATTTTCCTTGTCCGATGTGCACGCATACAGCCAGTAGAAAATCTGCTATTTTAACCCATATTACTCGTATGCACCACAGAAAATACGATTTTCAATGTCGCACTTGCGGGAAATGCTTTAACGACGCAACTACTTTCAAAGAACATGAAAATGTCCATCTCGGATTTAAGCCTTTCAGTTGTATCGTTTGTGGTCACGAATTTCTATATTCGCGTTATTTAATAGCGCATCAAATCAGGAATCATAGAGTAAGAGTTTTGGATAAAGAATCTAAAACTCAGTGTCATATTTGTCCGAAAATGTTCGCTAGAAATGAAACTTTAGTGAAACATGTGCTTACGAAGCATTTAACTTATCATGAGGGACCCCATGAAAAGAAGCATTTATGCGATGTATGCGGGCAAGGTTTTTCTAGAACTGACAAACTTAAAATACACTACAGAAAACATACCGGAGAAAAACCGTATTCCTGTGTGTATTGTAGTAAAAGTTTCATAAAAAAAGATTATTTGATTATGCACGAAAGGATTCATAACGGGGAAAAACCGTATGTTTGTGATTATTGCGGGAAAAGTTTCAATCAAGGAGCACCGTTACGGATTCATATGAGAAGTCATACTGGTGAAAGACCCTATAAATGCCCACATTGCACAGTGGAAGTGGAGATGCAAATAGACGATAAAGTTTTTGTTTTAAACAACGTATCTCCATCTGAAAAAAGAACCAGATCCGTAAAATCATCGAGTACTTCACCAAGAAAAATAAAATTAGAAGAAGAATCGGATGTATCAGAAGAGCAGGATGATGATGAATATAAACCACCGGGTTACAAAAAGAAACGAGTTGCCAAAGAGAAAAAACCACCAAAACCAAAAAGAGAAAAATTGAAAAGACAAGAACATAAAGTATGGACATGTAGAAGATGTTTAGAAGAATTTCTATCTCGTCGTGATCTTACTGAACATACCAAAACCTATCACCGAGAAGAAAATAAAGATATACATACATTTAAATTCGATGCTGAACAAGATTTATATATTTGTTCTACTTGTTCTGCTGAATATCAAAGCCAACAAGAAGTAGAGGATCATATATCAAAAATACACGAAGAATTTTATACATGTGAAATATGTAAACATACAGCTAAAAAAGCATATACTTTTGCTGTACATATGAAAACACATAGTGATGATGATACATATACGTGCCCTTTATGTAGTTATAATACTCCAAGAAGAACTTGTTTACAAACACACATTAACAGGGTTCATTATCACAAATTCTATTACACATGTCCTACTTGTGGTAAAGGATTTAATGATTCTGTTATATTTAAAGAGCATAATAATGAACATTTGGGTATTAAACCCTTCATTTGTGTTGTTTGTAATAAATCTTTTGTATACTCAAGATATATGCTAATACACCAAACTCGATACCATACAGTACACATTGCAGGTACACTACATAGAACCCAATGTAGTATTTGTTTAAAAGTTTTTAGTAAAGTTGCAACTTTACTTAAACACATAACAACTAAACACAACTCAACTCCTGATCGACCAGAAAAGCGCCATCTATGCGATATGTGTGGTAAAGGTTTTGGTACATCAGATAAATTAAAGATACATTATCGTATTCATACTGGAGATAAACCATTTGCTTGTAGATATTGCGAAAAGAGATTTACAAAAAAAGATTATCTAATTATGCATGAAAGGGTTCACACTGGTGAAAAACCGTATCCGTGTGAATATTGCGGGAAATGTTTTAATCAGGCTGCTTCGTTAAGGATTCATGTAAGAGGACACACTGGGGAACGTCCTTATATGTGTCAATTTTGTAATGGAGGTTATATATCTAGAGGTTCGCTTAATTTACATTTAAAAATTTGTAATGGAGTTTCTTTGTAG
Protein Sequence
MTTFSEIQNSKILIKFCINREWNGAKKSNRKKSTPSKRGRKTSTASTTPKKYVHKLKPNHKARAWVCKICFEEFETRKNLFDHRKLVHEDIDDIIKKEDLVEKYTFDVVLECYTCSNCSAEFQIKEEVEKHVEMHEEEKYDCQICNITLYGALVYSAHMQQHREDKNFPCPMCTHTASRKSAILTHITRMHHRKYDFQCRTCGKCFNDATTFKEHENVHLGFKPFSCIVCGHEFLYSRYLIAHQIRNHRVRVLDKESKTQCHICPKMFARNETLVKHVLTKHLTYHEGPHEKKHLCDVCGQGFSRTDKLKIHYRKHTGEKPYSCVYCSKSFIKKDYLIMHERIHNGEKPYVCDYCGKSFNQGAPLRIHMRSHTGERPYKCPHCTVEVEMQIDDKVFVLNNVSPSEKRTRSVKSSSTSPRKIKLEEESDVSEEQDDDEYKPPGYKKKRVAKEKKPPKPKREKLKRQEHKVWTCRRCLEEFLSRRDLTEHTKTYHREENKDIHTFKFDAEQDLYICSTCSAEYQSQQEVEDHISKIHEEFYTCEICKHTAKKAYTFAVHMKTHSDDDTYTCPLCSYNTPRRTCLQTHINRVHYHKFYYTCPTCGKGFNDSVIFKEHNNEHLGIKPFICVVCNKSFVYSRYMLIHQTRYHTVHIAGTLHRTQCSICLKVFSKVATLLKHITTKHNSTPDRPEKRHLCDMCGKGFGTSDKLKIHYRIHTGDKPFACRYCEKRFTKKDYLIMHERVHTGEKPYPCEYCGKCFNQAASLRIHVRGHTGERPYMCQFCNGGYISRGSLNLHLKICNGVSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-