Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000572:177295-187944[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.00095 0.03 14.8 1.2 1 23 113 136 113 136 0.94

2 23 0.0043 0.14 12.7 0.1 2 21 150 169 149 170 0.93

3 23 0.047 1.5 9.4 0.7 1 20 184 203 184 205 0.90

4 23 0.088 2.8 8.6 3.1 1 21 216 236 216 237 0.95

5 23 0.04 1.3 9.7 0.4 1 23 248 271 248 271 0.96

6 23 0.0011 0.033 14.6 0.2 1 23 276 299 276 299 0.95

7 23 1.4e-05 0.00045 20.5 2.2 1 23 341 363 341 363 0.97

8 23 8.7e-06 0.00027 21.2 0.4 1 23 369 391 369 391 0.96

9 23 2.9e-05 0.0009 19.6 2.1 3 23 399 420 397 420 0.96

10 23 0.14 4.3 8.0 1.9 1 23 428 450 428 450 0.97

11 23 0.036 1.1 9.8 2.3 1 20 456 475 456 478 0.93

12 23 0.006 0.19 12.3 5.3 1 23 484 507 484 507 0.97

13 23 0.0063 0.2 12.2 4.4 1 23 521 543 521 543 0.96

14 23 0.00074 0.023 15.1 2.1 1 22 549 570 549 570 0.94

15 23 1.7 52 4.6 2.0 1 19 732 750 732 755 0.93

16 23 0.00052 0.016 15.6 2.0 1 23 765 787 765 787 0.98

17 23 2.7e-05 0.00086 19.6 0.8 2 23 794 815 793 815 0.96

18 23 0.00075 0.023 15.1 3.4 1 23 821 844 821 844 0.96

19 23 0.00013 0.0042 17.5 2.2 1 23 852 874 852 874 0.96

20 23 0.00035 0.011 16.2 6.1 1 23 880 902 880 902 0.99

21 23 0.011 0.34 11.4 0.7 1 23 908 931 908 931 0.97

22 23 0.0036 0.11 13.0 3.6 1 23 966 988 966 988 0.97

23 23 2.6e-05 0.00081 19.7 3.4 1 23 994 1017 994 1017 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.00095	0.03	14.8	1.2	1	23	113	136	113	136	0.94
2	23	0.0043	0.14	12.7	0.1	2	21	150	169	149	170	0.93
3	23	0.047	1.5	9.4	0.7	1	20	184	203	184	205	0.90
4	23	0.088	2.8	8.6	3.1	1	21	216	236	216	237	0.95
5	23	0.04	1.3	9.7	0.4	1	23	248	271	248	271	0.96
6	23	0.0011	0.033	14.6	0.2	1	23	276	299	276	299	0.95
7	23	1.4e-05	0.00045	20.5	2.2	1	23	341	363	341	363	0.97
8	23	8.7e-06	0.00027	21.2	0.4	1	23	369	391	369	391	0.96
9	23	2.9e-05	0.0009	19.6	2.1	3	23	399	420	397	420	0.96
10	23	0.14	4.3	8.0	1.9	1	23	428	450	428	450	0.97
11	23	0.036	1.1	9.8	2.3	1	20	456	475	456	478	0.93
12	23	0.006	0.19	12.3	5.3	1	23	484	507	484	507	0.97
13	23	0.0063	0.2	12.2	4.4	1	23	521	543	521	543	0.96
14	23	0.00074	0.023	15.1	2.1	1	22	549	570	549	570	0.94
15	23	1.7	52	4.6	2.0	1	19	732	750	732	755	0.93
16	23	0.00052	0.016	15.6	2.0	1	23	765	787	765	787	0.98
17	23	2.7e-05	0.00086	19.6	0.8	2	23	794	815	793	815	0.96
18	23	0.00075	0.023	15.1	3.4	1	23	821	844	821	844	0.96
19	23	0.00013	0.0042	17.5	2.2	1	23	852	874	852	874	0.96
20	23	0.00035	0.011	16.2	6.1	1	23	880	902	880	902	0.99
21	23	0.011	0.34	11.4	0.7	1	23	908	931	908	931	0.97
22	23	0.0036	0.11	13.0	3.6	1	23	966	988	966	988	0.97
23	23	2.6e-05	0.00081	19.7	3.4	1	23	994	1017	994	1017	0.97

Sequence Information

Coding Sequence: ATGATTCCAGGAAAGTGTTCAATTTGTTTATCAAATTCTAAAGATCTAACTACAATTTATGATTTAGATGAAGAAGGGATTTTAATATCAACAAGATTGCAATTTTTAGCTCCTGAAGTGGATTGGACCCCAGAATACAAATTGTGCGGATTATGTATGTCAAATTTACAGGTAGCTTATAAGTTTAGAGAACAATGCTTAAATGTAAAAGGTGACAATTTTAAGAAGTTAGAGGAAGAACAGGAAGCAGAAAATAGCAATGTTGATGATTGTATCGATTTAAAAGTTGATTACACTTCTGATTCAGATGAAGAAAAATTTGATTCTCATCAGCATTTTATATGTTATCATTGCGGTTATAAAAGTACAACAAAAGATGATTTAATACAACATCTTGAAAATGAACATCAAACTGATCAAAAAGATGCAAGGTATAAGCGAAAAACAATGTGTCCTCAATGTGGAAGAAAATTTGCAAAAACATCATCTATGTCTGAACATATGGAAATATGTGATGGGGTGAGACGCCATCGAAAAGTTACTAATGAATTTCAATGCAATGTTTGTAATAAATTTTATAGTACATTTAAGATTTTAAAAGCGCATGAAAAAGCATGCGATGAAACAAAAATGAAAAAAACTAACTACCAGTGTCCTAAATGTTTTATATTTTACAAAAATGAGAAGTGTTTAATAAATCACACCAAACAAGGTTGTAAAAAGGAAGGCAAAGAACCGTCGTACTTTTGTAAAAGGTGTGATGCGATTTTTAATACTGTTTTAGATTTAAAAGATCACTTGGAGAAAGAACATAACATTGTAGATTATCAATGTGAAAAATGTTTAAAAATATTTGAAAACAATGATGAATTTATCGCGCATAAAAATGCTGAACATAAGAAAATGACCACCAAAAGAACTTTTTCTTGTGAAATCTGTTGTCAGGTATTTGATGCAATAAAAGAACTAATTGAACACTGCAGTGCACTACATTCATTAGACGAAAAAAGCGTAAAACCGTATTCTTGTGACATGTGTCCGAAAAGATTTCGTACATCGACAAACCTTCAAAGTCATAAACTCTACCACGAAGGTAAGAGGACACATATTTGTAGTATGTGTGGTAAAAGTTTTATAACAAAAGCTGATCTCATAAACCACGAAATGATCCATTATGAAAGTCGAAATTTTGGTTGTGACAAGTGTGGAAAAGCATTTAAAACGAAAAATAATTTATGTACACATTACTTAATAGTACACACTGATCCTATGCAATGGAAATTTGTCTGTGATGTGTGTGGTAAACGATCTCCTCTAAAATCGAATCACGATCAACACTACAGAAGGCATACAGGAGAAAAGAACTTTGCTTGTGCTCTTTGTAAAAAGCAGTTTTCGAGTAAACGAGAAATGCAAGTGCATCTACTATGTCATTCCAATGTTAAGAAACACAAATGTGATCAATGTGGGAGGGAATACAGGAAAAAGCATACCTTAGATATACATCTGAAGAAATCTCATAACATTGGTGATGCAAAGCTTCCAGTACGAATTAGAAAACATGCTTGCCATATTTGTCCAGGAAGATTTTACGATAAAGTTAAATTAGCAAGACATTTATGTACTCATTCAGGCTTAAAGCCATTTGCTTGTTATGCTTGTGAAAAGAAATTTACCGATAAATCGTATCTAAAACATCATCTGAAGACATGTTTACAGATGTCTCATATTGAGAATAATTGTTGTGTTTGTTTAAACAATATTCATAACTTAAACAAACTATCCCAAGAAGATGAAAACAATAAATCATTGTTAATAAAACTGACCACCACGGTCCCAGAAATATCTTGGTTTATTACATACCAAATATGTGAACCCTGTACAAATTTACTTAATGTTGTTTATCATTTTCGAGAAACGTGTTTTAAATCCGATTTGTTAAGACAACAGGCCAATGATGTAAAGTTAAATATTAAACCTGAGGAAAGTGATATTACTGCAGCTCAGAACGCAGCAAATAAAGAAAATAAAGATTTATGTAGTGTCGATAAGGACTCGCTTTTAAGTGACGCTGATAATGGAGATTTTAATGATTCTGGTAGTAGTGAAGACGAAATCTTTGTAGACGAGTGTATTGAAGTTGAATCTAACAAAGAAACGAAAGAAACTAAAAAGCGAAAACGAAATTTTGAATTCAACTGTGAACAGTGTTTAACGAAGTATACGTCCAGTAAAGATCTTGTGGAACATTGTGTGTCCGAACATGAAATGCAAAGTAAAGATGTTCGCCCTTTTTCCTGTACAAGATGTACTAGTCGTTTTGCTAATTCTTCAAATTTACTGCAACATATTAAATATCATGATGCTGTCCGATGTAATGTTTGCTCCTATTGTGGCAAGGGATTTATTACAAAAACCGATTTGAAAACACACGAGAAACAGCATCTGAATAAAAGGGAATATTCATGCCAACTTTGTAGGAAAAGCTTTAATACCCATAAGGATTTAAGATCTCACAAGTTAGTGGTTCATACAGACCCTGACTTATGGAAATACCTCTGTAATTATTGTCAAAAAAAATTTCCAATAAAATCAAACTATGATTCACATATGCGTCGACATACAGGAGAGAAAAATTTTGAGTGTCACTTGTGTTATAGAAAATTTGCAGACAAATGTGTGTTACAGAGGCATATGAGGACTCACTCAAATATTCGAGAATTTAGATGCAGCGAGTGTAGTAAAGAATATAAAGAAAAGAGGGTAATGCAAATTCATATGGCAAAAATACATGGTAGGTATATGAACGGTGTAAAATTTAAAAGTTTTTTAACACATTTTCATTTTTTAGGAATAGGTATCGGTGAGATAAAATTGCCGTCGAAGGAACGAAAGTATTTTTGTCACATGTGCCCAAAAGCTTATTATGCTAAAAATAAACTTACGCGCCACTTATATACACATACTGGTGAGAAACCGTTTTTCTGTGAAATTTGCAATAAAAAGTTTAATGATAAATCATACGTTAAGCAACATATGAAAAAAACTCATAATGTTAAATTAGAGGATAATTTATAA
Protein Sequence: MIPGKCSICLSNSKDLTTIYDLDEEGILISTRLQFLAPEVDWTPEYKLCGLCMSNLQVAYKFREQCLNVKGDNFKKLEEEQEAENSNVDDCIDLKVDYTSDSDEEKFDSHQHFICYHCGYKSTTKDDLIQHLENEHQTDQKDARYKRKTMCPQCGRKFAKTSSMSEHMEICDGVRRHRKVTNEFQCNVCNKFYSTFKILKAHEKACDETKMKKTNYQCPKCFIFYKNEKCLINHTKQGCKKEGKEPSYFCKRCDAIFNTVLDLKDHLEKEHNIVDYQCEKCLKIFENNDEFIAHKNAEHKKMTTKRTFSCEICCQVFDAIKELIEHCSALHSLDEKSVKPYSCDMCPKRFRTSTNLQSHKLYHEGKRTHICSMCGKSFITKADLINHEMIHYESRNFGCDKCGKAFKTKNNLCTHYLIVHTDPMQWKFVCDVCGKRSPLKSNHDQHYRRHTGEKNFACALCKKQFSSKREMQVHLLCHSNVKKHKCDQCGREYRKKHTLDIHLKKSHNIGDAKLPVRIRKHACHICPGRFYDKVKLARHLCTHSGLKPFACYACEKKFTDKSYLKHHLKTCLQMSHIENNCCVCLNNIHNLNKLSQEDENNKSLLIKLTTTVPEISWFITYQICEPCTNLLNVVYHFRETCFKSDLLRQQANDVKLNIKPEESDITAAQNAANKENKDLCSVDKDSLLSDADNGDFNDSGSSEDEIFVDECIEVESNKETKETKKRKRNFEFNCEQCLTKYTSSKDLVEHCVSEHEMQSKDVRPFSCTRCTSRFANSSNLLQHIKYHDAVRCNVCSYCGKGFITKTDLKTHEKQHLNKREYSCQLCRKSFNTHKDLRSHKLVVHTDPDLWKYLCNYCQKKFPIKSNYDSHMRRHTGEKNFECHLCYRKFADKCVLQRHMRTHSNIREFRCSECSKEYKEKRVMQIHMAKIHGRYMNGVKFKSFLTHFHFLGIGIGEIKLPSKERKYFCHMCPKAYYAKNKLTRHLYTHTGEKPFFCEICNKKFNDKSYVKQHMKKTHNVKLEDNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -