Avir003194.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00001453:40224-44995[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.26 8.2 7.1 5.2 2 23 143 165 143 165 0.95
2 12 2.4e-06 7.6e-05 22.9 5.9 1 23 191 213 191 213 0.98
3 12 1.1e-05 0.00036 20.8 4.2 1 23 219 241 219 241 0.97
4 12 6.3e-06 0.0002 21.6 4.1 1 23 247 269 247 269 0.99
5 12 1.7e-05 0.00055 20.2 3.6 1 23 275 298 275 298 0.97
6 12 1.5e-05 0.00048 20.4 3.7 1 23 304 326 304 326 0.99
7 12 2.1e-06 6.7e-05 23.1 6.5 1 23 332 354 332 354 0.99
8 12 5.6e-08 1.7e-06 28.1 1.6 1 23 360 382 360 382 0.98
9 12 9.7e-06 0.0003 21.0 2.8 1 23 388 410 388 410 0.98
10 12 1.2e-07 3.6e-06 27.1 4.8 1 23 416 438 416 438 0.99
11 12 1.6e-05 0.0005 20.3 5.6 1 23 444 466 444 466 0.98
12 12 1e-06 3.2e-05 24.1 1.4 1 23 472 494 472 494 0.99

Sequence Information

Coding Sequence
ATGGATGGTAACAAAGAAGCATCAAATCCATTAATGAATAATGAAATCGAAAGTAATCCTAAAGAATTGTTATATAGTATCAAAACCGAAGAAAATGGAATTGAAGAATGTAAACTCGAATTCGAGAACTTTTATGTGATGAAAAAGGAAAGTTGTGTAGAGAACGTTTCTTCAACTAAAAGCAATGTTGTGTTAATAAGCAAAGAAAATATAAAAACTGAAAATGTTGATTCAAATAAGGATATTGAAGAAAGAAAATGTGATATCGAAATTAAAACAGAAGCTACATTTGATTTCCATGCAAATGTTATCCATGATTTTGTTGAAAATCGACAAACAGGGCAAACAATCAAAATGTATCCTAGGAAAAAAAATTTCCTATCTGCGGCAAAAAAATGGCATCATCATTTTGGGAAATTCAATGGAACATGTTTGTATTGTGGACAATTTTTTTGTGATAAATTGTTATTTTTACATCATTTTAGTACTTACCACTTTATAGTTAAATCTAAAAAGTCTGTTGATTTAAGAATGAATAATTCTGCTACTAAACATATTGGACAAATATCCTTTAAATGCAAAATTTGTTCAAAATGTTTTAAAAACCAAAGTAATTTAAAAGAACATAATAGACTTCACACTGGCGAAAAATTATTCAAATGTGAAGTTTGTTCAAAGTGTTTCACAAATTCTAGTAGTCTTAAAATCCATTCTAAACTTCACACTAACAAGAGACCTTTTAAATGTGAAATTTGTGCAAAATGTTTTATAAAATCTAATGATTTAAAAAGGCATACTAGAACTCACACTGGCGATAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACAGAAAATGGAAGCTTAAAACAGCATATTATTAGATATCACATTGGTGAAATGTCATTCAAATGTGAAATTTGTCTAAAATGTTTCACACTACAAAATAGTTTAAAACTACATATTAGAACTCACACTGCAGATAAACTTTTTAAATGTAATGTTTGTTCAAAATGTTTCTCAGGACAAAGTCATTTAAATCGACATGTTAAAACTCATACTGGTCAAAAACCTTTTGAATGTGAAATTTGTTCAAAATGTTTCATAGATTCTAGTGATTTAAAAAAGCATATTAGAATTCACACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTTCGCAAAATCTAGTAATTTATATATGCATGTTAAAATTCACACTGGCGAGAAAGCTTTTAAATGTGAAATTTGTTCAAAATGTTTCAGATCATCCAATGATTTGAAACGGCATATTAGAACTCACACTGGTGAAAAACCTTACAAATGTGAGATTTGTTCAAAGAGTTTCTCACGAAAATGTTATTTAAAAACTCATAATAGAATTCACACTGGCGAGAAACCTTATAAATGTGAAATTTGTTCAGAATTATTCATATCATCAAGTAATTTAAAAAAGCATACTAGAACTCACACTGGTAAAACCTTACAGTTCTGA
Protein Sequence
MDGNKEASNPLMNNEIESNPKELLYSIKTEENGIEECKLEFENFYVMKKESCVENVSSTKSNVVLISKENIKTENVDSNKDIEERKCDIEIKTEATFDFHANVIHDFVENRQTGQTIKMYPRKKNFLSAAKKWHHHFGKFNGTCLYCGQFFCDKLLFLHHFSTYHFIVKSKKSVDLRMNNSATKHIGQISFKCKICSKCFKNQSNLKEHNRLHTGEKLFKCEVCSKCFTNSSSLKIHSKLHTNKRPFKCEICAKCFIKSNDLKRHTRTHTGDKPFRCEYCSKCFTENGSLKQHIIRYHIGEMSFKCEICLKCFTLQNSLKLHIRTHTADKLFKCNVCSKCFSGQSHLNRHVKTHTGQKPFECEICSKCFIDSSDLKKHIRIHTGEKPFRCEICSKCFAKSSNLYMHVKIHTGEKAFKCEICSKCFRSSNDLKRHIRTHTGEKPYKCEICSKSFSRKCYLKTHNRIHTGEKPYKCEICSELFISSSNLKKHTRTHTGKTLQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-