Avir015162.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000075:1825995-1828261[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.95 30 5.3 4.4 1 21 139 159 139 160 0.94
2 18 0.47 15 6.3 2.4 3 23 166 187 165 187 0.91
3 18 0.0055 0.17 12.4 7.0 1 23 238 260 238 260 0.98
4 18 1.6e-05 0.00051 20.3 0.3 1 23 266 288 266 288 0.97
5 18 0.00025 0.0078 16.6 4.2 1 23 294 316 294 316 0.98
6 18 9.7e-05 0.003 17.9 1.7 1 23 322 344 322 344 0.98
7 18 5e-05 0.0016 18.8 0.3 1 23 350 372 350 372 0.98
8 18 6.6e-05 0.0021 18.4 4.7 1 23 378 400 378 400 0.98
9 18 5.6e-06 0.00018 21.8 3.0 1 23 407 429 407 429 0.98
10 18 0.00034 0.011 16.2 3.9 1 23 435 457 435 457 0.97
11 18 2.6e-06 8e-05 22.9 2.4 1 23 465 487 465 487 0.99
12 18 7.1e-05 0.0022 18.3 1.9 1 23 493 515 493 515 0.98
13 18 1.1e-05 0.00034 20.9 1.0 1 23 521 543 521 543 0.97
14 18 2.2e-06 6.8e-05 23.1 2.7 1 23 549 571 549 571 0.99
15 18 5.7e-05 0.0018 18.6 0.8 1 23 577 599 577 599 0.99
16 18 2.8e-06 8.6e-05 22.8 0.9 1 23 607 629 607 629 0.99
17 18 0.00025 0.0079 16.6 0.6 1 23 635 657 635 657 0.99
18 18 4.3 1.3e+02 3.3 1.0 1 12 663 674 663 679 0.79

Sequence Information

Coding Sequence
ATGAACGATGATCCAGATTACGAGATAAATGAATCAGACATTGATTTTAATGTACTAGATTTTGAAATAATAGATGATACGAACAAAACTAGCGATATAGAAAGAACTACAACTTGTAATCCAGACATTTCTACAAATAAAAACTTTCGTAAACAAGATTTTTGGGACTTTAAAACTGAATGTTCTTCTGTTAAATGTAACTGTAAATTATCAAAGAAAATTACTTTTAACGACTTCGAAAAGAATATTAATGATCCTCCAATTATTAAAACAGAATTTGAATGTAATGATATTGACGTTAAGAAAGAATTATTACATTGTGATTTTGATTTACCTACACTGAAAATTGAAGAAATTGAAATTGTAGATGAGGATCTACAGAAAAGAGGAAAAAAACAGAAATTTGGCAAAAAGTACCAGTGTTTATTTTGCAAAATAAGTTTTTCGTCGATAAATCAACGATTTAAACACCAATGTAAGAAATTTTCTGAAATTTGTTTCTATTGTGGAGCACATTTTTATCAAAGAATACAGTTTTTGACCCATTTCTTTAGGCAACATCTTATAAAAAATACCAAAAACAGTAACAAGAAGATAAATAACTGTTATAGAAAAAAAGATATGAAACGCTTTCAATATGCTATTTGTGCCAAAAAGTTCCAAATACAACGCCACCTGAAACGACTTCAACTTGGTAATAGAAAAAATAAGTTTAACTGTAAAATTTGTTCACACACATTTACACTTAAAAGGACTTTTAAAAAACATTTAAAATCACACAGTGAAAAAAAGCCGTTTATATGTGATATTTGCTCACGCGCTTTTAGATTAAAAGGCTATCTAAGAAAACATATGATAGTTCATAATGAAGAAAAACCACATCAATGCGAAATTTGTTTACAAACTTTTAGACATAAACCATCCTTAAAGTTACATATGCTAAGACACAATGGAAAAGGTCCATTTAAATGTGAAATTTGTTTGCGCACTTTTGGAGAAAAAATGCATTTAAAACGACATATCTTAGTACATACTGGGGAAAAACCATTCCAGTGTGAAATTTGCTCACGCGCTTTTAGATTAATAGGCTATCTAAAAAAACATATGATAGTCCACAATGAAGAAAAACCACATCAATGCGAAATTTGTTCACAAACTTTTAGACATAAACCATCCTTAAAACTACATATGCTAAAACACACTGGAGAAAGTCCATTATTTAAATGTGAAATTTGTTTGCGCACTTTTGGAACAAAAACACATTTAAAACGACATATGTTAGTACATACTGGGGAAAAACCATTCCAGTGTGCAATTTGTTCATACGCTTGTAGAACTAAAACACATTTAAAACAACATATGGTAATACACACTGTCACTGTAGAAAGGCCATACAAATGTGAACTTTGTTCAAAAACTTTTAGACAAAAACTATCATTAACATCACATATGCTAACACACACTGGTGTAAAGCCATTTAAATGTGAAAAATGTTCTCGCACTTTTGCACTAAAACGATATTTAAAGCTACATATGCTAATACACACTGGAGAAAAGTTATTTAAATGTGAAATTTGTTCAAAATTTTTTGGACTCAAAAGTAATTTGAAACAACATATGGTGATACACACTGGAGAAAAGCCTTTCAAATGTAACATTTGTTCACTCACTTTTAATCTAAAAAACAATTTGAACCGGCATATGAAGACACACACTCATGCAGAGAGATTTAAATGTAATATTTGTCTAAATACTTATGCAAACAAATCAGGTTTAAAACAACATTTGCGAATACATACTCATAATGGAAAAAAGCCATTTAAATGTGAAATTTGTACACGCAGTTTTATACTAAAATCAGTTTTAAACAGACATATGCGGATACATACTGGGGAAAAACCATTTAAATGTGAAATCTGTTCAAACGCTTTTGGACAAAAAATAGTTTTAAAACAACATATGCGGAGACATACTGGAGAAAAGCCATTTCAATGTGACATTTGTTCAAACTCTTTTGGAAAAAAAAACTTTAGAACAACATATGCGGATACATACTGGAGAAAAGCCATTCAAATGTAA
Protein Sequence
MNDDPDYEINESDIDFNVLDFEIIDDTNKTSDIERTTTCNPDISTNKNFRKQDFWDFKTECSSVKCNCKLSKKITFNDFEKNINDPPIIKTEFECNDIDVKKELLHCDFDLPTLKIEEIEIVDEDLQKRGKKQKFGKKYQCLFCKISFSSINQRFKHQCKKFSEICFYCGAHFYQRIQFLTHFFRQHLIKNTKNSNKKINNCYRKKDMKRFQYAICAKKFQIQRHLKRLQLGNRKNKFNCKICSHTFTLKRTFKKHLKSHSEKKPFICDICSRAFRLKGYLRKHMIVHNEEKPHQCEICLQTFRHKPSLKLHMLRHNGKGPFKCEICLRTFGEKMHLKRHILVHTGEKPFQCEICSRAFRLIGYLKKHMIVHNEEKPHQCEICSQTFRHKPSLKLHMLKHTGESPLFKCEICLRTFGTKTHLKRHMLVHTGEKPFQCAICSYACRTKTHLKQHMVIHTVTVERPYKCELCSKTFRQKLSLTSHMLTHTGVKPFKCEKCSRTFALKRYLKLHMLIHTGEKLFKCEICSKFFGLKSNLKQHMVIHTGEKPFKCNICSLTFNLKNNLNRHMKTHTHAERFKCNICLNTYANKSGLKQHLRIHTHNGKKPFKCEICTRSFILKSVLNRHMRIHTGEKPFKCEICSNAFGQKIVLKQHMRRHTGEKPFQCDICSNSFGKKNFRTTYADTYWRKAIQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-