Avir007527.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000267:543308-567151[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 7.1e-05 0.0022 18.3 0.7 2 23 208 230 208 230 0.97 2 21 0.013 0.41 11.2 0.8 1 21 335 355 335 356 0.94 3 21 0.067 2.1 9.0 4.3 1 23 385 408 385 408 0.92 4 21 6.1 1.9e+02 2.8 0.0 6 20 419 433 419 435 0.93 5 21 0.013 0.4 11.2 0.7 1 23 441 464 441 464 0.94 6 21 0.00055 0.017 15.5 2.3 3 23 540 560 539 560 0.97 7 21 0.22 6.9 7.3 0.1 1 23 583 605 583 605 0.86 8 21 0.00027 0.0086 16.5 0.4 2 23 609 630 608 630 0.97 9 21 7e-05 0.0022 18.3 0.5 3 23 661 681 660 681 0.98 10 21 0.00093 0.029 14.8 0.3 1 23 731 754 731 754 0.98 11 21 0.0014 0.045 14.2 1.5 2 23 768 789 767 789 0.97 12 21 0.0049 0.15 12.5 8.3 1 21 816 836 816 838 0.94 13 21 0.0022 0.068 13.7 0.2 2 23 854 876 854 876 0.95 14 21 0.00026 0.008 16.6 1.6 1 23 895 917 895 917 0.98 15 21 0.0026 0.081 13.4 0.9 3 23 929 950 928 950 0.96 16 21 6.8e-05 0.0021 18.4 0.1 1 23 968 990 968 990 0.95 17 21 0.99 31 5.3 0.1 2 23 1025 1047 1024 1047 0.93 18 21 0.00098 0.031 14.7 1.3 2 23 1058 1079 1058 1079 0.97 19 21 1.9e-05 0.0006 20.1 1.0 1 23 1113 1136 1113 1136 0.97 20 21 1.2e-05 0.00036 20.8 2.9 1 23 1144 1166 1144 1166 0.98 21 21 0.0062 0.19 12.2 0.0 1 23 1181 1204 1181 1204 0.95
Sequence Information
- Coding Sequence
- ATGGAAGAGTCGATAAATTACCAATCTTGTTGCAGGCTTTGCCTCTGCGAGAAGGCTGATACTTTAAAACCAATTTTTGATCAAACGAATAATGATCTACAGCTATCACAGAAGATTTTACATTCTCTAACTATTCAAATTAACAATTCAGATCCGGTAACAACAATGGTATGTGAAGATTGTATAGAAAAAATTACAAATTGGAATTTCTACAAACAACAATGTATAGAAAATCAGAAAAAATTTCAGGAATTACTAGACTGTATTGTTCCTGTTCCACCAGTAACACCATCACCTGTTCCTGCTCTGTCAGCATCTGAAAATACTACACCAAACTCTAACAATGTTTCTATGGGTGAAATGACTTTTCATATAAAAGAAGAACCTGCTGATCATGATATAAATGATGAGACGCGAGAAATTATACAAGAAGCAATGCCAGAAAACATAGTACAACAGAATGACCAACAACAAATATGCGTTAAAAATGAACCATTAGATGTAGATGAACCGATGGACCAGGAATATAATGAATTTCCACCAAGTCTATCGCCACATCCATTTGGTCTGGCCGACAGTGAGTCTGATCCAGCTCCCAATCGCGATCCCGATATTAATAGAAAATGTAGCGTTTGTGGCAAAATTTTTAGTAATGCAGGAAACAGGAAAAAGCATGAAAGAGTACAGCATGGCCTTCATCCAACTGTGTGTGTATCTAGTCCAATAAATAAAGCCAATGATATTACAAACGGATTTTCAACTTCCGATGCTGCTAAAGAACAACAAAAAATATTATTTGCAATGGGCTTAAAATTGCTACAAACCAATTCAAAACCCATATCTTCGGATGAATTATCGAAGATAGAAGTAAGCTATAGTGAAAAATGCAAAGCAATGGTTAGCATGCATAAATCGTTGGTATGTGCTTGTCACAATGTACCACACCAAAATCTTAAAGGATTACTGTCCCATTTGCGAGCTCTTCGTATATGGTTCCCTGTTTTTACTTGCTATAATTGTATGATAACATTTACGGATCGATCTACGTTTACAAGACATATTGCTCGTTGCTCGAGCCAAGCTTTGAATGCCATTACAAAATTAAGTAATCTTAAAAAACGCAGCGAAGTTAAAACTAGACTCTATCAGAATTTTAAATGCACTATCTGCAAATTTATGTTTAGCTTCCACGAAGATTTTTGCGCCCATGTTGATGAAGATCATTCTTTGTTGCAGTTTCCAGTACACTGTCCTTGTGGTAGAGTATTTGAGAATGTTGAAGATTATAAAGACCATGTGTATGTTAGTTGTTTGGTAGATTTTTATTGTGACATATGTTTCATTACAACAAAAACTCTAGATGATTTTCAGAAACATGCTAAGGAGGTTCATGATCAATCTGAAGGTTTTATTCTTCTTCAAGATGATAATTATAAAGTAAAGAAACCTTCCTTACATAGCACACCAGGAGTAGATGAATCTGCTATTCTAACAGGTAAAAGAGAACGTAGAGCATCAGCAAGAGCTCCTCTAGCTTTACAAGATGATGATTTAGATGAAGTTCCTTCAGCGGTAGTTAAGCCAACCTTCCATACTCCAAGAACTGATAACAGAATATGTCCCATTTGTCATAAAGAATACTCATCGTATAAAAATATGATGCGGCATTATAAAAATCATAAGGATGTAGATATAAATCGTAAACAGCAAGGACATGACATGGATCTAGAAGATAAAGCATCATATTATTCTTGTCCAGAGTGTGGCGGAATGTTCAGCATGGAGGATTGGGAAAAACATCTGGCTGAAAAACATCCGTCTACACCTTGTGACGAATGTGGAAAATTATTCCAGTTTCAAAGTGATCTTGAACAACATCGGTCTACTCACTTGAATCTTAAAGTTTATAGAGACTCAAAAACTCATGCGTATAAGAGTGCTATGGTGAGTCCTAAATCTGAAGGCGACGTTATGCTTCTATGTGAAATTTGTGATGTAATGTTTACTACCAAAGAAGATTTAAAAAATCACAAATTAACACATGAACTTGAAGATATGAATGCAGATTCAGATCCTAGCATGGATGCAAATTTGGATCAATTAGATCTCGATATTGAACCAAATATAGAACTAGCTATGGAGCAAAGTATGGAAACTGGTGATGTGGATGTAATGGATAATACAAGGAAATTTAGATGTGAGGTTTGCGAAGAAGAATTCAATAGTTATTCTGGACTTTGGGAACATAACAGAACAAAACATCCAGACAGAAAAACTCCAAATGTTGATACTTATCCTAAAGAATGTAAAGACTGTGGTAAAGTATGCACGACTGGTGCTGCATTTTACCGACATAGACAAATACATGAAAAACCTTCTATTAATACTGTAAGCAGAACTTCATTACTTAAAAAGAAATTATCGGAGAACTCAGATGAATCTTACCATACATGTAAGCGATGCTTTAAAGTATTTTCAAGTAAATATAACTTGAAGAATCACTTAAAATGTCATGGAATCAATCCAGCATCTGGTAATAGAAGGATGTCACGAAAAGCTGTTTGTAAAATATGTCAACAAATCTTTGAAACACAAGAAGAGTTAATCTTACATAGAAAAGAACAACATTTTCTGGAAGTTGCAGTTAAGACTGAGGCACCAGTTGAAGAAGAATCGTTAATTTTCACATGCGATATTTGTGTTATGACGTTTAATAACAAGACCGCATTGAAAAAACATAAAGAAAAACATAACCAGGTACCTAGAACAAAAAAAATGGTATTCTGTAAACATTGTAAAATTCCTTTCGAAACTATTGCCCAATTAACACAACATATGGTAACGGAACATGATCAACGTGTTAAAAAGAAAGTCGTGAAGTATACTCAACAGGTTGATGGTTATTCTTGTAATATTTGCAAGAAATCGTTTGGGTCAGCAGGAGCTTTGACCACTCATATAGGGTGGCACAAACGTGCCCAGAATGAAACAAATACAAAACTAATGAAACCAGTTACTCAGAGCAAAGCAAAGGTAACAGTTAAAGAAGAACCCAATGAAGTTAAAAGGTTGCAATGTAGTACATGCTTTATATCATTACCGAATGACACCGCTTTACAAGTCCACATTTTAGAAAAACACAGAAGCGTGAGTGCCATCATGTTAGTACCCCGTTGTAACACTTGTAACAAAGACTTCGCGAGTCAAGAAGAGTACGAGACGCACAAACGTCTTCATGACTTTTTAGAAAGGCAGAAGCAGCATGAGCAAAAGATGTTGGTTCGACAGCAAGAACAGAAATTCAGTCCAAACACTGCTGGTCCAAAAGTAAAGAGTTATCCTTGTAAACATTGTAACGCAGCTTTTAGTCGATCTGATACATTAGGTGCTCATATGCGCCAGTTCCATAAAGATTATATTGCTACTGAATTCAGATGTCACTATTGCGATAGAGTTTTCGAAAAACAAAATTCTCTGACGATTCATTTGAAGGTTCATGAAAAACAGAGAAACATGCAAGTACCTCCTAGTAAGCCCTTATTTGCTTGTTCCATTTGTAATATGGGATTTGATTTACCAAAGGATTTAAGAGCGCATACTATTAGTGCTCACCCATTTTGA
- Protein Sequence
- MEESINYQSCCRLCLCEKADTLKPIFDQTNNDLQLSQKILHSLTIQINNSDPVTTMVCEDCIEKITNWNFYKQQCIENQKKFQELLDCIVPVPPVTPSPVPALSASENTTPNSNNVSMGEMTFHIKEEPADHDINDETREIIQEAMPENIVQQNDQQQICVKNEPLDVDEPMDQEYNEFPPSLSPHPFGLADSESDPAPNRDPDINRKCSVCGKIFSNAGNRKKHERVQHGLHPTVCVSSPINKANDITNGFSTSDAAKEQQKILFAMGLKLLQTNSKPISSDELSKIEVSYSEKCKAMVSMHKSLVCACHNVPHQNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTRHIARCSSQALNAITKLSNLKKRSEVKTRLYQNFKCTICKFMFSFHEDFCAHVDEDHSLLQFPVHCPCGRVFENVEDYKDHVYVSCLVDFYCDICFITTKTLDDFQKHAKEVHDQSEGFILLQDDNYKVKKPSLHSTPGVDESAILTGKRERRASARAPLALQDDDLDEVPSAVVKPTFHTPRTDNRICPICHKEYSSYKNMMRHYKNHKDVDINRKQQGHDMDLEDKASYYSCPECGGMFSMEDWEKHLAEKHPSTPCDECGKLFQFQSDLEQHRSTHLNLKVYRDSKTHAYKSAMVSPKSEGDVMLLCEICDVMFTTKEDLKNHKLTHELEDMNADSDPSMDANLDQLDLDIEPNIELAMEQSMETGDVDVMDNTRKFRCEVCEEEFNSYSGLWEHNRTKHPDRKTPNVDTYPKECKDCGKVCTTGAAFYRHRQIHEKPSINTVSRTSLLKKKLSENSDESYHTCKRCFKVFSSKYNLKNHLKCHGINPASGNRRMSRKAVCKICQQIFETQEELILHRKEQHFLEVAVKTEAPVEEESLIFTCDICVMTFNNKTALKKHKEKHNQVPRTKKMVFCKHCKIPFETIAQLTQHMVTEHDQRVKKKVVKYTQQVDGYSCNICKKSFGSAGALTTHIGWHKRAQNETNTKLMKPVTQSKAKVTVKEEPNEVKRLQCSTCFISLPNDTALQVHILEKHRSVSAIMLVPRCNTCNKDFASQEEYETHKRLHDFLERQKQHEQKMLVRQQEQKFSPNTAGPKVKSYPCKHCNAAFSRSDTLGAHMRQFHKDYIATEFRCHYCDRVFEKQNSLTIHLKVHEKQRNMQVPPSKPLFACSICNMGFDLPKDLRAHTISAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -