Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000226:596028-599044[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.011 0.35 11.4 7.3 1 22 110 131 110 134 0.91

2 16 5.2 1.6e+02 3.0 4.6 2 23 136 158 136 158 0.90

3 16 3.5e-06 0.00011 22.4 2.5 1 23 225 247 225 247 0.98

4 16 0.00017 0.0054 17.1 0.5 1 23 253 276 253 278 0.92

5 16 3.1e-06 9.7e-05 22.6 2.0 1 23 282 304 282 304 0.99

6 16 9.5e-06 0.0003 21.1 2.5 1 23 310 332 310 332 0.95

7 16 2e-05 0.00063 20.0 2.2 1 23 338 360 338 360 0.99

8 16 1.2e-05 0.00038 20.7 2.3 1 23 366 388 366 388 0.98

9 16 3.4e-05 0.001 19.3 1.2 1 20 394 413 394 416 0.95

10 16 7e-07 2.2e-05 24.6 2.4 1 23 422 444 422 444 0.98

11 16 0.00069 0.021 15.2 0.8 2 23 450 472 450 472 0.97

12 16 2e-06 6.2e-05 23.2 3.3 1 23 478 500 478 501 0.96

13 16 0.079 2.5 8.7 2.0 1 23 504 526 504 526 0.97

14 16 1.2e-05 0.00036 20.8 0.6 2 23 532 554 531 554 0.96

15 16 1.4e-06 4.3e-05 23.7 1.6 1 23 560 583 560 584 0.94

16 16 1.6e-06 4.9e-05 23.5 3.1 1 23 587 609 587 609 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.011	0.35	11.4	7.3	1	22	110	131	110	134	0.91
2	16	5.2	1.6e+02	3.0	4.6	2	23	136	158	136	158	0.90
3	16	3.5e-06	0.00011	22.4	2.5	1	23	225	247	225	247	0.98
4	16	0.00017	0.0054	17.1	0.5	1	23	253	276	253	278	0.92
5	16	3.1e-06	9.7e-05	22.6	2.0	1	23	282	304	282	304	0.99
6	16	9.5e-06	0.0003	21.1	2.5	1	23	310	332	310	332	0.95
7	16	2e-05	0.00063	20.0	2.2	1	23	338	360	338	360	0.99
8	16	1.2e-05	0.00038	20.7	2.3	1	23	366	388	366	388	0.98
9	16	3.4e-05	0.001	19.3	1.2	1	20	394	413	394	416	0.95
10	16	7e-07	2.2e-05	24.6	2.4	1	23	422	444	422	444	0.98
11	16	0.00069	0.021	15.2	0.8	2	23	450	472	450	472	0.97
12	16	2e-06	6.2e-05	23.2	3.3	1	23	478	500	478	501	0.96
13	16	0.079	2.5	8.7	2.0	1	23	504	526	504	526	0.97
14	16	1.2e-05	0.00036	20.8	0.6	2	23	532	554	531	554	0.96
15	16	1.4e-06	4.3e-05	23.7	1.6	1	23	560	583	560	584	0.94
16	16	1.6e-06	4.9e-05	23.5	3.1	1	23	587	609	587	609	0.99

Sequence Information

Coding Sequence: ATGGATCTTGTTGAAGAGAAAATAAAAATAGATATAACAAACACGTTGGAGCAGTATTCTGATTTACACTTGCAAAAGTTTGGTGACATGAAAACTGAAAATATAGATCAATCAAATGATATTAAAATTGAAATATCTACAGACAATGTTAAAACTGAACTAGAGATACATAATATTGAGAAAGGTAATTCGAGCAGATATTTTGAAGAAAAGGACTATGATAGTAAAGGTGTAAAACACGAACCAAGTGAGGTGTCAAAAGTAAAGCTTGGAAAAGTTGAAATTAGAACAGAACAGAGGCAGAAACACTTCAATTATGGGAAATTCTACAAGTGTCCATTATGTCCAAAACGTTTTTCATCCTCGAAGCAACGACTAAAACATCACTGTAGAAAATACCATCGAACTTGTTGTTTTTGTGGACAATTTTTTTTTAACAAACTGCAATTTTTACAACATTTTTTTGTATATCACTTATTAAAAAGATCTGCACATTGTGATAGTAGTAGACAGAACAATTGTTTAAGAAAACAAAATAAAAAGTACAATGCTGCAAGATTGCTTCAATACAAAATTTGTACAAAAATATTTCAGTCGAAACGAAAGAAGACACACAATAATTCGTTTAAATATAAAAAATCCTCGAACAGTTTAAAAACCCAAAGAAAATTGTTCGAGTGCAAAATTTGTTCCAAAACATTAACAAGGAAATTTAATTTGAAAACACATCTACGAATTCACACTGGAGAAAAACCGTTTAAATGTGATATTTGTAGTAAATCATTTCCAAGCAAACCTACTTTGTCTGCTCACAACCTGCAGACTCATATTAAAAATGGGCCATATAAATGTAATATTTGTACAAACTCATATTTTTCCAATTCTAATTTGCAAACGCATATGAGAGTTCATACAGGGGAAAAACCATTTTTATGCGAAATTTGTAAAAAAGCTTTCCCTCGCAAACATTCTTTAAAACTGCATATGAAATTACACACGAACGAAGGAATATTTAAATGCGAATTTTGTCCAAAAACATTTGTAGATAATCATGTTTTGAAATTGCATGTACGAACTCACACTGGGGAAAAACCGTTTAAATGTGAAATTTGTACAGAAGCATTCCACCGGAAAGATTATTTAAAAGCACATATGACGTCTCACCAAACAGAACAACTATATAAATGTGAATTTTGTTCAAAAACATTTATCAGAAAAGATAATTGGACTACACATATGTGGGTTCACAGTGAAGAGAAACCATTTAAATGTAACATTTGTTCAAAATCTTTTACACGCAAAGATAGTGTAAACAACCATATGAAACTTCACAATGGAAGTGCAGCTAAATGTGAAATTTGCCTACAACCATTCATAACACTTCATTATTTAAGGGAACATATAAGAAAAGTTCATACTGAAGAAAAACCATTTGAATGTGAAATTTGTACAAAACAGTTCAAAGTAAGAAGTTATTTGAATCGTCATATGAAGGTCCATCATAAGCCATTTAGTTGTGATACTTGTACAGAATCATTCCCATGTAAAGTTACTTTACAAAATCATGCTAAACTTCACACAGAAGAAACAGTGCAATGTACTATTTGTTCAGAAACATTTACAAATCAATATAATTTAATAGAGCATAAAAAAATAACTCACATTGTAGAAAAAACCTTTAAATGTGAAATTTGTACAAAAACCTTCAGAACTAAGGGTAATTTGAATGAACATATTACTGGAGTTCATCATAAGCCATTCAAATGTGATATATGCACAAAAATATTCTCGAAAAAAAGAAGTTTAAGAAATCATATGAATCGTCACAGCACAGAAAAAATCAAATCTGAAGTTTCGGTCCAATAA
Protein Sequence: MDLVEEKIKIDITNTLEQYSDLHLQKFGDMKTENIDQSNDIKIEISTDNVKTELEIHNIEKGNSSRYFEEKDYDSKGVKHEPSEVSKVKLGKVEIRTEQRQKHFNYGKFYKCPLCPKRFSSSKQRLKHHCRKYHRTCCFCGQFFFNKLQFLQHFFVYHLLKRSAHCDSSRQNNCLRKQNKKYNAARLLQYKICTKIFQSKRKKTHNNSFKYKKSSNSLKTQRKLFECKICSKTLTRKFNLKTHLRIHTGEKPFKCDICSKSFPSKPTLSAHNLQTHIKNGPYKCNICTNSYFSNSNLQTHMRVHTGEKPFLCEICKKAFPRKHSLKLHMKLHTNEGIFKCEFCPKTFVDNHVLKLHVRTHTGEKPFKCEICTEAFHRKDYLKAHMTSHQTEQLYKCEFCSKTFIRKDNWTTHMWVHSEEKPFKCNICSKSFTRKDSVNNHMKLHNGSAAKCEICLQPFITLHYLREHIRKVHTEEKPFECEICTKQFKVRSYLNRHMKVHHKPFSCDTCTESFPCKVTLQNHAKLHTEETVQCTICSETFTNQYNLIEHKKITHIVEKTFKCEICTKTFRTKGNLNEHITGVHHKPFKCDICTKIFSKKRSLRNHMNRHSTEKIKSEVSVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -