Avir012469.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000543:665941-671009[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.068 2.1 8.9 0.5 2 23 136 158 136 158 0.91
2 15 0.00013 0.0041 17.5 5.6 1 23 212 234 212 234 0.98
3 15 2e-06 6.4e-05 23.2 1.5 1 23 240 262 240 262 0.98
4 15 9.2e-06 0.00029 21.1 4.2 1 23 268 290 268 290 0.99
5 15 2.1e-05 0.00066 20.0 2.3 1 23 296 318 296 318 0.99
6 15 0.00019 0.006 17.0 5.7 1 23 324 346 324 346 0.98
7 15 1.7e-05 0.00052 20.3 2.8 1 23 352 374 352 374 0.99
8 15 4.7e-06 0.00015 22.0 3.0 1 23 380 402 380 402 0.99
9 15 6.6e-05 0.0021 18.4 3.5 1 23 408 430 408 430 0.98
10 15 1.7e-05 0.00054 20.3 1.4 1 23 436 458 436 458 0.98
11 15 0.00011 0.0035 17.7 0.2 1 23 464 486 464 486 0.99
12 15 2.3e-05 0.00071 19.9 0.7 1 23 492 514 492 514 0.99
13 15 5.8e-08 1.8e-06 28.0 1.7 1 23 520 542 520 542 0.99
14 15 3.8e-06 0.00012 22.3 3.9 1 23 548 570 548 570 0.99
15 15 0.0056 0.18 12.3 2.0 1 23 576 597 576 597 0.98

Sequence Information

Coding Sequence
ATGGATGGTTTCAAAGAAGCATCAGATTCATTAATGAATAGTAAAAAAATCGAAAGTAATCCTAAACAATTGTTATCTAATATTAAAACCGAAGAAACTGAAACTGAAGACTGTAAAGTTGAATTCGAGAACTTGCATCAAATTGACTTTTATACAATGAAAAAGGAAAGTTGTGTAGAAAAAGTTTATCCAACTAAAAGTAATGTGTTAATAATCAAAGAAAATATAAAAACTGAAAATGTTAATTCAAATGAGAGTATTCAAGAAAGAAAATGTAATATCAAAATTAAGACCGAAGCTGTTGATAATCGACAAAGAGTGCAAACAATCAAAATGTATACTAGAAAAAAATGTTTTCTATCAGCGCGAAAAAAGTGTCAACCTCACTATGGGAAATCATATGGAACATGTCCCTCTTGTGGACAATTTTTTTTTGATCAATGGCTATTTTTAAACCATTTTTATATTTACCACTTTTTAGTTAATTCTATAAAATCTGCTAACTCGAGAAGGAATAATTCTGCTAAAAAACGTGTTGGAGAAATATCCTTCAAATTCGAAATTTTTTCAAAATGTTTCACACAATCCAGTTATTTAAAAAAGTATATTAAAAGTCACACTGGTAAAAAATCTTTCAAATGTAAATTTTGTTCAAAGAGTTTCACATACAAACATGTTTTAAAGCAACATATTAACATTCACACTGGCGAGAAACGTTTTAAATGTGAAATTTGTTCAAAATGTTTCTCACAATCCGGTCCTTTAAATAGACATATTAGCATTCACACTGGGGAGAAACGTTTCAAATGTGAAATTTGTTCAAAATGTTTCAGGGAATCCGGTGGTTTAAAAAGACATTTTCGAACTCACACTGGTGAAAAACCTTACAGATGTGTAATTTGTTCAAAATGTTTTGTAGAATCCGGTGTTTTAAAAAAGCATATGAAAACTCACACAGGTGAAAAACCTTTCAGATGTGACATTTGTTCAAAATGTTTCACATACAAACATGTTTTAAAACAACATATTAGCATTCACACTGGCGAGAAACGTTTTAAATGTGAAATTTGTTCAAAATATTTCACATTATCAAATAATTTAAAAACACATATTAAAAAACACACTGGAGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTATGTAGAATCCGGTCAATTAAATACGCATATTAGAACTCACTCTGGTGAAAAACCTTTCAGATGTGAGATTTGTTTAAAATGTTTCACATACAAAAATGTTTTAAAACAACATATTAGAATTCACACTGCCGAGAAACCTTTTAAATGTGAAATTTGTTTAAAAGGTTTCAGGACATCCGCTGAATTAAAAAAGCATTTTTCAACTCATACTGGTGTAAAACCTTACAGTTGTGAAATTTGTTCCAAAAGTTTTATAGAAGCCGGTATTTTAAATAGGCATATTAAAACTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATATTTCATAGAACCCAGTGTTTTAAAAATGCATATGAAAACTCACACTGGTGAAAAACGTTTTAAATGTGAAATTTGTTCAAAATATTTTTCACGGCAAAGTAACTTAAAAGATCATATCAGAATTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCTCATTTAAAAATGGTTTAAAACAACATATTAGAATTCACACTTGTGAAAAACCTTTCAAATGTGAAATTTGTTTAAAATGTTTCGCAGAAGAAAGCTTAAAACAGCACATTAGTACTCACACTATCGAAAATGCTTTTAAATGTATAGTATAA
Protein Sequence
MDGFKEASDSLMNSKKIESNPKQLLSNIKTEETETEDCKVEFENLHQIDFYTMKKESCVEKVYPTKSNVLIIKENIKTENVNSNESIQERKCNIKIKTEAVDNRQRVQTIKMYTRKKCFLSARKKCQPHYGKSYGTCPSCGQFFFDQWLFLNHFYIYHFLVNSIKSANSRRNNSAKKRVGEISFKFEIFSKCFTQSSYLKKYIKSHTGKKSFKCKFCSKSFTYKHVLKQHINIHTGEKRFKCEICSKCFSQSGPLNRHISIHTGEKRFKCEICSKCFRESGGLKRHFRTHTGEKPYRCVICSKCFVESGVLKKHMKTHTGEKPFRCDICSKCFTYKHVLKQHISIHTGEKRFKCEICSKYFTLSNNLKTHIKKHTGEKPFKCKICSKCYVESGQLNTHIRTHSGEKPFRCEICLKCFTYKNVLKQHIRIHTAEKPFKCEICLKGFRTSAELKKHFSTHTGVKPYSCEICSKSFIEAGILNRHIKTHTGEKPFKCEICSKYFIEPSVLKMHMKTHTGEKRFKCEICSKYFSRQSNLKDHIRIHTGEKPFKCEICSKCFSFKNGLKQHIRIHTCEKPFKCEICLKCFAEESLKQHISTHTIENAFKCIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-