Avir008973.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000330:23527-28822[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.6 19 6.0 2.1 3 23 144 165 143 165 0.93
2 14 1.6e-07 4.9e-06 26.7 3.9 1 23 188 210 188 210 0.99
3 14 0.00096 0.03 14.8 2.1 1 23 216 238 216 238 0.98
4 14 9.9e-07 3.1e-05 24.2 1.7 1 23 244 266 244 266 0.99
5 14 2.4e-06 7.4e-05 23.0 3.6 1 23 272 294 272 294 0.97
6 14 5.7e-07 1.8e-05 24.9 5.8 1 23 300 322 300 322 0.99
7 14 4.8e-06 0.00015 22.0 4.1 1 23 328 350 328 350 0.98
8 14 2.5e-06 7.7e-05 22.9 3.9 1 23 356 378 356 378 0.98
9 14 1.8e-06 5.7e-05 23.3 2.2 1 23 384 406 384 406 0.98
10 14 3.5e-06 0.00011 22.4 4.3 1 23 412 434 412 434 0.99
11 14 5.2e-05 0.0016 18.7 2.1 1 23 440 462 440 462 0.98
12 14 1.7e-05 0.00053 20.3 4.5 1 23 468 489 468 489 0.98
13 14 3.6e-06 0.00011 22.4 3.9 1 23 495 517 495 517 0.99
14 14 1e-06 3.2e-05 24.1 1.4 1 23 523 546 523 546 0.97

Sequence Information

Coding Sequence
ATGGATGGTAACAAAGAAGCATCAAATCCATTAATGAATAATGAAATCGAAAGTAATTCTAAAGAATTGTTATCTAAGATTAAAACCGAAAAAATTGAAATGGAAGAATGTAAACTCAAATTTGAGAATTTTTATGTTATGAAAAGGGAAAGTTCTGTAGAAAAAGTTTCTTCTACTAAAAGCGATGTTGTGTTAATAAGCAAAGAAAATATAAAAACTGAAAATGTTGATCCAAATGAGGATATTGAAGAAAGAAAATGTGATATCGAAATTAAAACAGAAGCTACATTTGATTTTCCTGCAAATGCTATCCATGATTTTGTTGAAAATCGACAAACAGGGCAAACAATCAAAATGTATCCTTGGAAAAAAAGTTTCTTATCTGCAGTAAAAAAATGGCAACCTCATTTTGGGAAATTCAATGGAATATGTTCTTCTTGTGGACAATTTTTTTATGATAAATTGTTGTTTTTAAATCATTTTTGTATTTACCACTTTTTAGTTAATTCTAAAAAGTCTGTTAACTTGAGAAGGAATACTTCTGCTATTGGACAAATATCCTTTAAATGCGAAATTTGTTCAAAATGTTTCTCAAAATCCAGTGAATTAAAAGAGCATATTAGAACTCACAATGACGAGAAACCTTTTATGTGTAAAATTTGTTCCAAATGTTTCGCACTATCTAGTATTTTAAGTAAACATATGATAAGCCACACTAGTGGAAAATCTTTCAGATGTGAGATTTGTTCAAGAAATTTCACACGAGAAACTACCTTAAAACGACATATTAGAATTCACACTGACAAGAAACCTTTTGAATGTAAAATTTGTTCAAAATGTTTCACAACAGCTAGTCAGTTACAAATGCATGTTAGATTTCACACTGGCAAGAAATCTTTTAAATGTGATTTTTGTTCAAAATGTTTCAAATCACCCAAAAATTTAAAAAATCATATTAGAACTCACACTGGTGAAAAACTTCACAGATGTGAGATTTGTTCAAAAGGTTTCGCACAAAAAGGTCACTTAACAAATCATACTAGAACTCACAATGACGAGAAACCTTTTATGTGTAAAATTTGTTCAAAATGTTTCACACGTTCCAGTGTTTTAAATAAGCATATGATAAGCCACACTGGTGAAAAATCTTTCAGATGTGAGTTTTGTTCAACAAGTTTCACACGACAAAGTGTCTTAAAACGACATATTAGAATTCACACTAATGAAAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTTCAGAGAATCCGGTAATTTAACAAAGCATTATCGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGCTCAAAATGTTTCGTAGAATCCAATGTTTTAAGAAAGCATATTAAAATTCACACTGGTGAAAAACGTTTCAAATGTGATATTTGTTCAAAAAGTTTCACACAAAATTATTTAAAGCATCATATGAGAATTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCTCACTTAAAAATGGTTTAAAACAACATATTAGAACTCACACTAACGAGAAACCTTTTGAATGTGAAATTTGTACAAAATGTTTCGCAGAACAAAGCAACTTAAACAAACATATTATTAGTACTCACACTAACAAAATGTAG
Protein Sequence
MDGNKEASNPLMNNEIESNSKELLSKIKTEKIEMEECKLKFENFYVMKRESSVEKVSSTKSDVVLISKENIKTENVDPNEDIEERKCDIEIKTEATFDFPANAIHDFVENRQTGQTIKMYPWKKSFLSAVKKWQPHFGKFNGICSSCGQFFYDKLLFLNHFCIYHFLVNSKKSVNLRRNTSAIGQISFKCEICSKCFSKSSELKEHIRTHNDEKPFMCKICSKCFALSSILSKHMISHTSGKSFRCEICSRNFTRETTLKRHIRIHTDKKPFECKICSKCFTTASQLQMHVRFHTGKKSFKCDFCSKCFKSPKNLKNHIRTHTGEKLHRCEICSKGFAQKGHLTNHTRTHNDEKPFMCKICSKCFTRSSVLNKHMISHTGEKSFRCEFCSTSFTRQSVLKRHIRIHTNEKPFKCEICLKCFRESGNLTKHYRTHTGEKPFRCEICSKCFVESNVLRKHIKIHTGEKRFKCDICSKSFTQNYLKHHMRIHTGEKPFKCEICSKCFSLKNGLKQHIRTHTNEKPFECEICTKCFAEQSNLNKHIISTHTNKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-