Avir014913.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000726:216873-222233[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2.3e-06 7.3e-05 23.0 0.8 1 23 117 139 117 139 0.97
2 14 0.00022 0.007 16.7 8.4 1 23 145 167 145 167 0.99
3 14 1.1e-07 3.5e-06 27.1 3.4 1 23 173 195 173 195 0.98
4 14 2.1e-07 6.5e-06 26.3 2.2 1 23 201 223 201 223 0.99
5 14 0.19 5.9 7.5 3.1 1 19 225 241 225 245 0.86
6 14 4.5e-05 0.0014 18.9 4.6 1 23 251 273 251 273 0.98
7 14 9.3e-06 0.00029 21.1 4.4 1 23 279 301 279 301 0.98
8 14 3.3e-07 1e-05 25.6 4.3 1 23 307 329 307 329 0.99
9 14 7.2e-06 0.00023 21.4 4.8 1 23 335 357 335 357 0.99
10 14 2.8e-05 0.00088 19.6 4.5 1 23 363 386 363 386 0.96
11 14 1e-05 0.00031 21.0 3.2 1 23 392 414 392 414 0.99
12 14 1.9e-06 5.9e-05 23.3 7.5 1 23 420 442 420 442 0.99
13 14 1.8e-08 5.5e-07 29.7 3.1 1 23 448 470 448 470 0.99
14 14 2e-06 6.3e-05 23.2 1.5 1 23 476 499 476 499 0.97

Sequence Information

Coding Sequence
ATGTTGAATCAAATGAGGATATTGAAGAAAGAAAATGTGATATTGAAATTAAAACAGAAGATACATTTGATTTCCATGCAAATGCTATCCATGATTTTGTTGAAAATCAACAAACAGGACAAACAATTAAAATGTATTCTAAGAAAAAAAGTTTCCGATCTGCGACAAAAAAATGGCATCATCATTTTGGGAAATTCAATGGAACATGTTTGTATTGTGGACAATTTTTTTTGTGATAAATTGTTATTTTTACATCATTTTAGTATTTACCACTTTATAGTTAAATCTAAAAAATCTTTTGATTTGAGAATGAATAATTCTGCTACAAAACATATTGGACAAATTTCCTTTAAATGCGAAATTTGTTCAAAATACTTCAAAGATCAAAGTTTATTAAATCAGCATATTATACTTCACACTGGTGAAAAATTATTCAAATGTGAATATTGTTCGAAATGTTTCACAAAATCCAAGTGTTTAAAAATGCATGTTAGAATTCACACCAACGAGAAACCTTTTATGTGTGATATTTGTTCAAAATGTTTCCGAAGATCTGATGATTTGAAAAGGCATATTATGACTCACACTGATGAAAAACCGTTCAGATGTGAAATTTGTTCAAAATGCTTCCGACAACAAGTTGATTTAGAAGAACATATTCGAACTCATCCTTTTAAATGTCTAATTTGTTCGAAATGTTTTCAAAGTAATTTAGAAATGCATGATAAAATTCACAGTGGTGAGAAACTTTTTAAATGTGAAATTTGTTCTAAATGTTTTAAAGAACAAAGTTATTTAAAAGAGCATAATAGACTTCACACTGGCGAAAAATTATTCAAATGTGAAGTTTGTTCAAAGTGTTTCACAAATTCTACTAGTCTTAAAATCCATTTTAGAATTCACACTAACGAAAGACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCAAAACATCTAGTCAGTTAAAAATTCATGTTAGAAGTCACACTGGCGAGAGACCATTTAAATGTGAAATTTGTGAAAAATGTTTCATAAAAACTACTGATTTAAAAAGGCATACTAGAACTCACACTGGCGATAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACAAAAAATGGAAGCTTAAAACAGCATATTGTTAGATATCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTCTAAAATGTTTCACACTACAAAATGATTTAAAACTACATATTAGAACTCACACTGCAGATAAACCTTTTAAATGTAAAGATTGTTCAAAATGTTTCACAGGACAAAGTCATTTAAATCGACATGTTAAAACTCATACCGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACAGATTCCAGTGATTTAAAAAGGCATATTAGAATTCACACTGGTGAAAAACCTTACAAATGTGAAATTTGTTTAAAATCTTTCTCAGATAAAAGAAGCTTAAAGCAGCATATTATTAGATACCACACTGACAAGAAAGCATTTTAA
Protein Sequence
MLNQMRILKKENVILKLKQKIHLISMQMLSMILLKINKQDKQLKCILRKKVSDLRQKNGIIILGNSMEHVCIVDNFFCDKLLFLHHFSIYHFIVKSKKSFDLRMNNSATKHIGQISFKCEICSKYFKDQSLLNQHIILHTGEKLFKCEYCSKCFTKSKCLKMHVRIHTNEKPFMCDICSKCFRRSDDLKRHIMTHTDEKPFRCEICSKCFRQQVDLEEHIRTHPFKCLICSKCFQSNLEMHDKIHSGEKLFKCEICSKCFKEQSYLKEHNRLHTGEKLFKCEVCSKCFTNSTSLKIHFRIHTNERPFKCEICSKCFKTSSQLKIHVRSHTGERPFKCEICEKCFIKTTDLKRHTRTHTGDKPFRCEYCSKCFTKNGSLKQHIVRYHTGEKSFKCEICLKCFTLQNDLKLHIRTHTADKPFKCKDCSKCFTGQSHLNRHVKTHTGEKPFKCEICSKCFTDSSDLKRHIRIHTGEKPYKCEICLKSFSDKRSLKQHIIRYHTDKKAF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-