Avir000404.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001009:128037-135353[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.13 4.2 8.0 5.4 1 23 139 162 139 162 0.93 2 16 0.00014 0.0045 17.4 0.8 1 23 188 210 188 210 0.97 3 16 4.1e-07 1.3e-05 25.4 3.3 1 23 216 238 216 238 0.98 4 16 0.00015 0.0047 17.3 3.5 1 23 243 265 243 265 0.98 5 16 5.7e-06 0.00018 21.8 2.5 1 23 271 293 271 293 0.99 6 16 0.0019 0.059 13.8 5.7 1 23 299 321 299 321 0.99 7 16 3.8e-05 0.0012 19.2 4.9 1 23 327 350 327 350 0.97 8 16 2.7e-05 0.00085 19.6 2.1 1 23 356 378 356 378 0.99 9 16 0.00012 0.0039 17.6 7.4 1 23 384 406 384 406 0.99 10 16 1.1e-06 3.4e-05 24.0 4.5 1 23 412 434 412 434 0.99 11 16 1.6e-06 5.1e-05 23.5 2.2 1 23 440 462 440 462 0.99 12 16 3.1e-06 9.8e-05 22.6 4.1 1 23 471 493 471 493 0.99 13 16 5.5e-06 0.00017 21.8 5.0 1 23 499 521 499 521 0.99 14 16 1.3e-06 4.2e-05 23.7 6.5 1 23 527 549 527 549 0.99 15 16 5.3e-07 1.7e-05 25.0 5.7 1 23 555 577 555 577 0.99 16 16 1.1e-05 0.00034 20.9 0.7 1 23 583 606 583 606 0.96
Sequence Information
- Coding Sequence
- ATGGATGGTATCAAAGAAGCCACAACACCATTAATGAATAATGAAATCGAAAGTAATCCTAAAGAATTGTTATCTACGATTAAAACCGAAGAAATTGAAGAATGTAAACTCGAATTCGAGAACTTGCATCAAATAATGAAAAGGGAAAGTTCTGTCGAAAAAGTTTCTTCAAGTAAAAGCGATGATGTGTTAATAAGCAAAGAAAATATAAAAACTGAAAATGTTGATTTAAATAAGGATATTGAAGAAAGAAAATATTTTATCGAAATTAAAACAGAAGCTGCATTTGATTTCCATGCAAATGTTATTCATGATTTTGTTGATAATCCACAAATAGGGCAAACAATTAAAATGTATCCTAGGAAAAAAAGTTTCCCATCTGCGGCAAAAAAATGGCATCATCATTTTGGGAAATTCACATGTTTGTATTGTGGACAATTTTTTTGTGATAAATTTTTATTTTTATATCATTTTAGTATTTACCACTTTATAGTTAAAACTAAAAAATCTGTTGATTTGAGAGTGAATAATTCTGCTACTAAACATATTGGACAAATATCCTTTAAATGCGAAATTTGTTCAAATAACTTCAAAGATCAAAATTATTTAAATCAGCATATTATACTTCACACTGGTGAAAAATTATTTAAATGTGATATTTGTTCAAAATGTTTCCGAAAATCTGATGATTTGAAAAGACATATTATGATTCACACTGAAAAATCGTTCAGATGTGAAATTTGTTCAAAATGCTTCCTACAACAAGGTGATTTAAAAAGGCATTTTAGAATTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCCAAATGTTACGAAAAACCTAGTCAATTAAAAATTCATGTAAGAAGTCATACTGGCGAAAGACCATTTAAATGTGAAATTTGTGAAGATTGTTTCATGAAACCTTATCATTTAAAAAGTCATACTAGAACTCACACTGGCGAAAAACCTTATAGATGTGAATATTGTTCAAAGTGTTTCACAGACTCTAGAAGATTAAAAAAACATCTTATTAGAGATCATCGTGGTGAAAAGCCATTCAAATGTAAAATTTGTCTAGAATGTTTCACACTACCAAATGATTTAAAACTACATATTAGAACTCACAGTGAACAGAAACCTTTTAAATGTAAATTTTGTTCAAAATGTTTCGCTGGACAAAATCATTTAAATCGACATGTTAAAACTCACACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATATCTCCTAGTTGTTTAAAAATTCATATTAGAACTCACACTGGTGAAAAACCTTACAAATGTGCAATTTGTTTAAAATCTTTCTCAGAAAAAAGAAGCTTAAAGCGACATCTTAGAACTCACACTGCAGGTAAACCGTGTAAACCTTTTAAATGTAAAGTTTGTTCAAAATGTTTCACAGGACAAAGTGATTTAAATCAACATGTTAAAACTCATACTGGTGAAAAACCTTTTAAATGTGAATTTTGTTCAAAATGTTTCACAGGTAAAAGTGATTTAAATCGACATGTTAAAACTCATACTGGTGAAAAACCTTTTAAATGTGAATTTTGTTCAAAATGTTTCACACAACCCGGTCACTTAAAAACTCACATTAGAACTCACACTACAGATAAACCTTTTAAATGTAAATTGTGTTCAAAATGTTTCACACGATCCAGTAGTTTAAAAACCCATATTAGAATTCACACTGGTGAAAAACCTTACAAATGTGAAATTTGTTTAATATCTTTCTCAGATAAAAGAAGCTTAAAGCGACATATTATTCAAACTCACACTGACGAGAAAGCATTTTAA
- Protein Sequence
- MDGIKEATTPLMNNEIESNPKELLSTIKTEEIEECKLEFENLHQIMKRESSVEKVSSSKSDDVLISKENIKTENVDLNKDIEERKYFIEIKTEAAFDFHANVIHDFVDNPQIGQTIKMYPRKKSFPSAAKKWHHHFGKFTCLYCGQFFCDKFLFLYHFSIYHFIVKTKKSVDLRVNNSATKHIGQISFKCEICSNNFKDQNYLNQHIILHTGEKLFKCDICSKCFRKSDDLKRHIMIHTEKSFRCEICSKCFLQQGDLKRHFRIHTGEKPFKCEICSKCYEKPSQLKIHVRSHTGERPFKCEICEDCFMKPYHLKSHTRTHTGEKPYRCEYCSKCFTDSRRLKKHLIRDHRGEKPFKCKICLECFTLPNDLKLHIRTHSEQKPFKCKFCSKCFAGQNHLNRHVKTHTGEKPFKCEICSKCFISPSCLKIHIRTHTGEKPYKCAICLKSFSEKRSLKRHLRTHTAGKPCKPFKCKVCSKCFTGQSDLNQHVKTHTGEKPFKCEFCSKCFTGKSDLNRHVKTHTGEKPFKCEFCSKCFTQPGHLKTHIRTHTTDKPFKCKLCSKCFTRSSSLKTHIRIHTGEKPYKCEICLISFSDKRSLKRHIIQTHTDEKAF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056865;
- 90% Identity
- iTF_00056865;
- 80% Identity
- -