Avir006974.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00002451:5799-11058[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.2 39 5.0 5.2 2 23 143 165 143 165 0.90
2 18 3.2e-06 0.0001 22.5 0.8 1 23 191 213 191 213 0.97
3 18 9.4e-05 0.0029 17.9 6.8 1 23 219 241 219 241 0.98
4 18 2.8e-05 0.00087 19.6 2.0 1 23 247 269 247 269 0.98
5 18 3.3e-06 0.0001 22.5 3.1 1 23 275 298 275 298 0.97
6 18 7.2e-07 2.3e-05 24.6 2.4 2 23 305 326 304 326 0.97
7 18 0.24 7.4 7.2 1.7 1 23 328 350 328 350 0.90
8 18 0.03 0.95 10.0 9.7 1 23 356 378 356 378 0.97
9 18 0.00044 0.014 15.8 0.9 2 23 385 406 384 406 0.96
10 18 2.2e-06 7e-05 23.1 4.2 1 23 412 434 412 434 0.99
11 18 7e-06 0.00022 21.5 4.1 1 23 440 462 440 462 0.99
12 18 1.4e-05 0.00043 20.6 2.8 1 23 468 491 468 491 0.97
13 18 1.5e-05 0.00047 20.4 1.1 1 23 497 519 497 519 0.99
14 18 4.8e-06 0.00015 22.0 7.2 1 23 525 547 525 547 0.99
15 18 3.5e-06 0.00011 22.4 4.0 1 23 553 575 553 575 0.99
16 18 4.5e-08 1.4e-06 28.4 3.8 1 23 581 603 581 603 0.99
17 18 9e-08 2.8e-06 27.4 2.7 1 23 609 631 609 631 0.98
18 18 1.4e-07 4.4e-06 26.8 5.0 1 23 637 659 637 659 0.99

Sequence Information

Coding Sequence
ATGGATGGTATCAAAAAAGCATCAAATCCATTAATGAATAATGAAATCGAAAGTAATCCTAAAGAATTGTTACCTACTATTAAAACCGAAAAAATTGAAATTGAAGAATGTAAACTCAAATTTCAGAACTTTTATGTGATGAAAAGGGAAAGTTGTGTAGAGAACGTTTCTTCAACTAAAAGCAATGTTGTGATAATAAGCAAAGAAAATATAAAAACTGAAAATGTTGATACAAATAAGGATATTGAAGAAAGAAAATGTGATATCGAAATTAAAACAGAAGCTACATTTGATTTCCATGCAAATGCTATCCATAATTTTGTTGAAAATCGACAGACAGGGCAAACAATCATAATGTATTCTAGGAAAAAAAGTTTCACATCTGCGGCAAAAAAATGGCATCATCATTTTGGGAAATTCAATGGAACATGTTCGTATTGTGGACAATTTTTTTTTGATAAATTGTTATTTTTACATCATTTTACTATTTGCCACTTTATAGTTAAATCTAAAAAATCTGTTGATTTGACAGTGAATAATTTTGGTACTAAACATATTGGACAAATATCATTTAAATGCGAAATTTGTTCAAAATACTTCAAAGATCAAAGTTTATTAAATCAGCATATTATACTTCACACTGGTGAAAAATTATTCAAATGTGAATATTGTTCAAAATGTTTCACAAAATCCAAGCGTTTAAAAAGGCATGTTAAAATTCACACTAACGAGAAACCTTTTAAATGTGATATTTGTTCAAATTGTTTCCGAAGATCTGTTGATTTGAAAATGCATATTATGATTCACACTGGTGGAAAACCGTTCAGATGTGAAATTTGTTCAAAATGTTATATACAAAAAAGTAACTTAAAACAGCATATTATTAGAAATCACACTGGTGAAAAGTCATTGAAATGTGAAATTTGTTTTAAATGCTTCCGACAACAAGGTGATTTAGAACAACATATTAGAACTCATCCTTTTAAATGTATAATTTGTTCAAAATGTTTTCAAAGTTTGAGTGATTTAGACATGCATGATAGAATTCACAGTGATGAGAGACCTTTTAAATGTGAAACTTGTTCTAAATGTTATAAAAAACAAAGTTGTTTAAAAGAGCATAATAGATTTCACACTGGCGAAAAATTATTGAAATGTGAAGTTTGTTCAAAGCTTTTCATAAATTCTAGTAGTCTTAAAATCCATTTTAAACTTCACACTAACGAGAGACCTTTTAAATGTGAAATTTGTTCAAAATATTTCAAAACATCTAGTCATTTAAAAATTCATGTTAGAAGTCACACTGGAGAGAGACCATTTAAATGTGAAATTTGTGCAAAATGTTTCGTAAAATCTAATGATTTAAAAAGGCATACTAGAACTCACACTGGCGAAAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACAGAAAATGGAAGCTTAAAACAGCATATTATTAGAGATCACACTGGTGAAAAGTCATTCAAATGTGAAATTTGTCTAAAAAGTTACACACTACAAAATGATTTAAAACTACATATTAGAACTCACAGTGCAGATAAACCTTTTAAATGTAAAGTTTGTTCAAAATGTTTTACAGGACAAAGTCATTTAAATCGACATGTTAAAACTCATACTGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCAAAAACCAAAATTATTTAAAACTGCATATTATAACTCACACTGACGAGAGACCATTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATCCAGTGATTTAAAAAAGCATATTAGAATTCACACTGGTGAAAATCCTTACAACTGTGAAATTTGTTCAAAATGTTTCACATCTTCCAGTGATTTAAAAGTTCATATCAGAACTCACACTGGTGAGAAACCTTATAAATGTGAAATTTGTTCAAAATGTTTCATATCATCAAGTAATTTAAAAAAGCATACTAGAACTCACACTGGTAAAACCTTACAGTTGTGA
Protein Sequence
MDGIKKASNPLMNNEIESNPKELLPTIKTEKIEIEECKLKFQNFYVMKRESCVENVSSTKSNVVIISKENIKTENVDTNKDIEERKCDIEIKTEATFDFHANAIHNFVENRQTGQTIIMYSRKKSFTSAAKKWHHHFGKFNGTCSYCGQFFFDKLLFLHHFTICHFIVKSKKSVDLTVNNFGTKHIGQISFKCEICSKYFKDQSLLNQHIILHTGEKLFKCEYCSKCFTKSKRLKRHVKIHTNEKPFKCDICSNCFRRSVDLKMHIMIHTGGKPFRCEICSKCYIQKSNLKQHIIRNHTGEKSLKCEICFKCFRQQGDLEQHIRTHPFKCIICSKCFQSLSDLDMHDRIHSDERPFKCETCSKCYKKQSCLKEHNRFHTGEKLLKCEVCSKLFINSSSLKIHFKLHTNERPFKCEICSKYFKTSSHLKIHVRSHTGERPFKCEICAKCFVKSNDLKRHTRTHTGEKPFRCEYCSKCFTENGSLKQHIIRDHTGEKSFKCEICLKSYTLQNDLKLHIRTHSADKPFKCKVCSKCFTGQSHLNRHVKTHTGEKPFKCEICSKCFKNQNYLKLHIITHTDERPFKCEICSKCFTQSSDLKKHIRIHTGENPYNCEICSKCFTSSSDLKVHIRTHTGEKPYKCEICSKCFISSSNLKKHTRTHTGKTLQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-