Avir012217.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
ZNF236
Assembly
None
Location
GWHAMMQ00000529:509217-522785[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 1.9 58 4.4 4.5 1 23 110 132 110 132 0.90
2 25 0.041 1.3 9.6 0.1 1 23 138 161 138 161 0.97
3 25 0.0045 0.14 12.7 2.7 1 23 167 189 167 189 0.96
4 25 0.0013 0.042 14.3 0.1 2 23 196 217 195 217 0.97
5 25 0.0004 0.012 16.0 1.3 2 23 229 250 228 250 0.95
6 25 6.2e-06 0.00019 21.7 0.4 1 23 272 294 272 294 0.98
7 25 3.6e-06 0.00011 22.4 2.7 1 23 300 322 300 322 0.99
8 25 0.00028 0.0087 16.5 0.2 1 23 328 351 328 351 0.95
9 25 0.012 0.36 11.4 2.6 1 23 361 384 361 384 0.96
10 25 2.7e-05 0.00084 19.7 0.3 1 23 442 464 442 464 0.99
11 25 0.00024 0.0074 16.7 1.6 1 23 470 492 470 492 0.98
12 25 0.041 1.3 9.6 1.7 1 23 498 520 498 520 0.98
13 25 9.8e-05 0.0031 17.9 3.4 1 23 598 620 598 620 0.97
14 25 2.8e-05 0.00087 19.6 1.6 1 23 626 648 626 648 0.98
15 25 3e-07 9.3e-06 25.8 1.5 1 23 654 676 654 676 0.99
16 25 0.006 0.19 12.3 2.9 1 23 682 705 682 705 0.97
17 25 0.37 12 6.6 2.3 3 21 858 876 856 877 0.92
18 25 3.2e-06 9.9e-05 22.6 1.7 2 23 926 947 925 947 0.97
19 25 0.014 0.44 11.1 4.5 2 23 951 972 950 972 0.96
20 25 5.6e-06 0.00018 21.8 2.3 1 23 981 1003 981 1003 0.98
21 25 7e-07 2.2e-05 24.6 1.6 1 23 1009 1031 1009 1031 0.99
22 25 6.7e-05 0.0021 18.4 2.0 3 23 1040 1060 1038 1060 0.98
23 25 0.37 11 6.6 0.6 1 23 1066 1088 1066 1088 0.96
24 25 0.0014 0.045 14.2 0.3 3 23 1267 1288 1265 1288 0.95
25 25 0.21 6.6 7.4 0.4 1 23 1306 1329 1306 1329 0.94

Sequence Information

Coding Sequence
ATGTTAACTACCAGTCATTTAAAATCTAATGCAGAAGAAACTGATTTATCGAGTTATTTAATTATACCATTTGATTCTTCTAATGATCCTCTTCAATATGAACAAATTAAACTTCTTCCCGAAGGTACGGTATATATTATTCATCCCGATAATCAGGAACCTAATGATAAGCCAGTGCTGGAAAATTTGAAAGAACCTATTACTGATATTAATACAAAAGAATGTAGTATTGAAGAAGTACCTCCTGTAAACGCTGATACTACCACACCTGAACCTGTAAATTCTGACAATGTTGTAAATAACTCTACTACTTCAGTAAACATTAAGTATCGGTGCAATAAATGTGATAAGAATTTTTTAACAATTAAAGATTGCAAAGAGCATCTGAAATCTCATAAAGCCAATAAAAAATTTAAATGTGATAAGTGCCCTGCTGGATATAATATAGAGAATAACTTAAAAGTTCATAAAATGATAGAGCATTATGATCGTCTACGATATAGTTGCTCTATTTGTCACACTGCTTTTAAAAGAAAAGCTAGCTTAATATGTCATTTAATAATACATCAGGTGGAGGAAATCCTCTCATGCCATGATTGTGAAGCAGAATTTGAAGAAGAGGACGAACTTGCTAAACATATGATAACTCATGCATCAAAACTCAAAGAAGAGTCGCCTTCACTTAAATGTTCGTATTGTGAGCTAGAATTTGATACAAAATCACAATTCAATACTCACATGTCAGATCATAATAAAGCTTGGAAGTATTTTAAACGAAAAAAAGTTAAGAGAACAATTACACAATATAGGAAATTTACTTGTGAGATATGTAGCAAGGCTTTTATTAAACAGTCATTATTAGATCGACATTTAAGAATTCATAGTGGCGAGAAACCATTTAAGTGTACCATATGCGATCATAGTTTCACACAGAAAGGGTCTCTACAAATACATCTAATGAAACATACAGGAGACAAACCATTTGCGTGTACTTTGTGTCCAGCTAAATTTATTCAGAAAGGTAATCTTCGAGTTCATATCACTAAAACACACACTGCACCGAAAGGACAACAAAAAATGTTTAAATGTCCACATTGTTCCTGTATTTTTAAACGAATTGCATCACTAAATGGTCATGTAACTAAAGCTCATTTGAAATTTCGTTTTACTGAAGAAAATCCTGTAGATAACGTTATCAAAAATTTAAAGTATTTGGAGGAAAAATCTTTTGATTCGTATGTAACTTTGACAGAATCTTTAATGAATGAAGAAGGTGAAAGGAAGTATTTTGTTCAGATGAAAATGATGGGAGACTGTAGGTTTTATCGATGTTCTTATTGTCCAAAAATGTGGAAAAAACCTTCTGATTTAATTAGACATATTCGAATTCACACTAAAGAAAGACCGTTTTCTTGCAAACTCTGTGGAAAGAAATTTTCTTTGAAATCTATATTGATGTCTCATATGAGTACTCATGGTGTAAAGGAAAATTTTACATGTGAAATTTGCGGATCTATGCATACATCCCGTAGATTATTGAATATTCATATAAAGAAACACGAATACGATAAATTATCAAAATGGCATTGTAATACCTGTAATACAGTTTTTGATGAATTCGAAAAAGCATTAGAACACAAAATGACTCAAGAGCAACCTCATATCATCGAATCTGTTGTTAATACCGTAATGAAACAACCCCTTTACGAAACTGTTTATGGTAATTTAACATTTAAACCACCAAAACATAAAATTCCAAATACAGGTAGCGAATCTTCAATTTCAAGACGTTTTCATTGTACTTTATGTGATGCTAAGTTTACTAGAAAAATTAATTTAAAAAGGCACCTGAAAGGACATGAAGGAGATAAGAAATTTAGGTGCCATTTATGTCCAAAGGCATTTATAACCTCGTATAGACTAAAAGAACACATTAACATTCACAACAATATAAAAAATTATGTATGTAAAGTTTGTAATAAACGATTTGGTACATCAACAAACCTTCGAAGACATATGATAACACACAATAATTTAAGACCATATACATGTCCTTATTGCTCTAAACATTTTCAAACATTGGATTTAAGTAGGCGACATATTAAGTCTGTTCATAAAAAAGATGTATTGCCGAAAATTGATTCTAAACTTGCACAGTTAAATAAATTAAACAATAATGTGGGCCAGGCTACTAGTGTGATTATTAATAATACAACTAACTCTATTATGAACGATGTGACACCTGTTCTAAACATTGGAACTCCAACAGTTGACGAAAGCACTCAAAATACTTCTTCGAATAATCATGTCTTAAATGAGATAACAGACCCAAATGCAACTCTTCAGACTTTTTATATAAACTTAGATGATCTTCAGTTTCTTAACGTACCTGGATTAGACTTAAATGCGTTGGTTGATAAGTCAAGGACGACTGAGAATCTACCGATTACTTCAGAAGTTTTTGAAAAAAATTCTGTTATAACATATCCAAATTCTATTCAACCATTAAGTAGTTCAGAAGATATGTTCGATAATGATGCTAGGAACATTTTTGATGATGCCAGTGTTATTTGTATGAATTGCCATACAATGTTTTCTAATTTTATCCAGTTTCAAAAACATGTTTGTTCAAATTTAAACAATAATATAACTAATACGTTAAATACTCAAGATATAAATACTCAGGAGAAGTTACCTAGTATACCAGAAGAAAATAATCAACAAGAGAAGATACAAAAAGTGAATTTAAATAAAACATTAAATAATAAAGATATAAGTTGTTCAATATGTAAAAAAATATTCAAGAAAAGTAGTTTATTAAGGAAACACATGAAAATCCACTCTAGCTGCACATGTTCGAAGTGTAAAAAGGTTTTTTCAGAAAAAACTGGATATTTTCTGCATTTGTCTACTCATCGAGCTACAGATGGAAGTAATATGTATTCGTGTGTCTTTTGTTCTAAGAAATTTAAGAAACCGTCAGATTTGCAACGACATGTTCGTACACATACTGGAGAAAAACCTTTCCAATGTGAAATTTGTGAAAAAAGTTTCAATTTAAAATCAACTTTAAAATCCCATATAAGAACTCATGAATCTAGTAATAAGCCATTCGGTTGCGATATTTGCAATCATTTCTTCTCTTCCAAAAACAGCTTAAATATTCATATGAGGATTCATACAGGACAAATGCCTTATTCATGTGCAACATGTAAATTAGAATTTCGAACGTTGGCTTCAAAAAAATCACACGAGGCATCACATCAACGTCGAGTACCAAAAAAGAAATCAAATAGAGTTTCTAATAACGCTATTAACGATCTTTTAACATCATTATCATCTGATATTGTTTCTAATAGTAACGAAACCAAGAAGAACGATATATCTGAGTTTGTTTCTATTAATGGATATAATAATTTAGTTATGAATGATAATAATTTAACGCCACCAGTTCAAACTTTAGATCTACCATCACAAATAGTAAATCTTGATATACCTACAGATGCAATATTATCAACAATATCTGAAGACCAATTACAAGTAGATCCATCCAATATTTTCCAACAACTTCAAATGACTGATATGGTACTTACAACCAACGAAACTGAACCAGTAGCTTCTTTGATATTAGATGATGTTAATTTCTTAGATTTAAATTCTACTGAAAATAATTTACAGATCATGTCATTACCTGAAACTGATGGTGGTGCTGTTACTATCAGTATTAAAGAGAATATGGATGTTAATGAAAAAAATGTTTCATCGAAACCCAGTAAAGATAAACCGAAATCAGTTATTTGTGAAATTTGTTTAAAAACTTATGCTTCAAAAGATGGTTTAAGGAAACACAAGAAGAATGTACATGGTGATAAAAAGAAAAATCTTCAGAATCACGTGACACAACATTTAAACCAGTTTGTCTGTACTCTGTGTAATATGAGGTTCCTAGACGAGGGAACTTTACAGGAACATTTAACCAATTTCCATCAACAAGACGAAGTATCCAGGGAACAAACTAGTGCCTTGTTAAATCTTAAATTAGATCTGCCACCATCTACCATTGATGAGCCTTTATTCAACAATTTATTTTTATTAAAAAAGATATAA
Protein Sequence
MLTTSHLKSNAEETDLSSYLIIPFDSSNDPLQYEQIKLLPEGTVYIIHPDNQEPNDKPVLENLKEPITDINTKECSIEEVPPVNADTTTPEPVNSDNVVNNSTTSVNIKYRCNKCDKNFLTIKDCKEHLKSHKANKKFKCDKCPAGYNIENNLKVHKMIEHYDRLRYSCSICHTAFKRKASLICHLIIHQVEEILSCHDCEAEFEEEDELAKHMITHASKLKEESPSLKCSYCELEFDTKSQFNTHMSDHNKAWKYFKRKKVKRTITQYRKFTCEICSKAFIKQSLLDRHLRIHSGEKPFKCTICDHSFTQKGSLQIHLMKHTGDKPFACTLCPAKFIQKGNLRVHITKTHTAPKGQQKMFKCPHCSCIFKRIASLNGHVTKAHLKFRFTEENPVDNVIKNLKYLEEKSFDSYVTLTESLMNEEGERKYFVQMKMMGDCRFYRCSYCPKMWKKPSDLIRHIRIHTKERPFSCKLCGKKFSLKSILMSHMSTHGVKENFTCEICGSMHTSRRLLNIHIKKHEYDKLSKWHCNTCNTVFDEFEKALEHKMTQEQPHIIESVVNTVMKQPLYETVYGNLTFKPPKHKIPNTGSESSISRRFHCTLCDAKFTRKINLKRHLKGHEGDKKFRCHLCPKAFITSYRLKEHINIHNNIKNYVCKVCNKRFGTSTNLRRHMITHNNLRPYTCPYCSKHFQTLDLSRRHIKSVHKKDVLPKIDSKLAQLNKLNNNVGQATSVIINNTTNSIMNDVTPVLNIGTPTVDESTQNTSSNNHVLNEITDPNATLQTFYINLDDLQFLNVPGLDLNALVDKSRTTENLPITSEVFEKNSVITYPNSIQPLSSSEDMFDNDARNIFDDASVICMNCHTMFSNFIQFQKHVCSNLNNNITNTLNTQDINTQEKLPSIPEENNQQEKIQKVNLNKTLNNKDISCSICKKIFKKSSLLRKHMKIHSSCTCSKCKKVFSEKTGYFLHLSTHRATDGSNMYSCVFCSKKFKKPSDLQRHVRTHTGEKPFQCEICEKSFNLKSTLKSHIRTHESSNKPFGCDICNHFFSSKNSLNIHMRIHTGQMPYSCATCKLEFRTLASKKSHEASHQRRVPKKKSNRVSNNAINDLLTSLSSDIVSNSNETKKNDISEFVSINGYNNLVMNDNNLTPPVQTLDLPSQIVNLDIPTDAILSTISEDQLQVDPSNIFQQLQMTDMVLTTNETEPVASLILDDVNFLDLNSTENNLQIMSLPETDGGAVTISIKENMDVNEKNVSSKPSKDKPKSVICEICLKTYASKDGLRKHKKNVHGDKKKNLQNHVTQHLNQFVCTLCNMRFLDEGTLQEHLTNFHQQDEVSREQTSALLNLKLDLPPSTIDEPLFNNLFLLKKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-