Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000182:523851-554687[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 38 0.9 28 5.4 8.6 3 23 4 22 2 22 0.95

2 38 0.0038 0.12 12.9 0.9 2 23 45 67 44 67 0.96

3 38 0.00072 0.022 15.2 3.5 1 23 72 94 72 94 0.97

4 38 0.00012 0.0038 17.6 4.4 1 23 104 127 104 127 0.98

5 38 1.3e-05 0.0004 20.7 1.1 2 23 191 212 190 212 0.97

6 38 0.001 0.033 14.6 7.2 1 23 218 240 218 240 0.97

7 38 0.00031 0.0098 16.3 1.0 1 23 246 268 246 268 0.98

8 38 0.0029 0.091 13.3 0.2 2 23 275 297 275 297 0.92

9 38 0.00016 0.0051 17.2 2.0 1 23 302 324 302 324 0.96

10 38 0.017 0.52 10.9 1.9 2 23 335 357 334 357 0.93

11 38 6.5e-05 0.002 18.4 1.3 1 23 364 386 364 386 0.98

12 38 5.7e-06 0.00018 21.8 1.0 2 23 393 414 392 414 0.97

13 38 1.8e-06 5.6e-05 23.4 2.2 1 23 420 442 420 442 0.98

14 38 0.0022 0.069 13.6 1.1 1 23 448 471 448 471 0.97

15 38 3.7 1.2e+02 3.5 0.4 1 23 483 505 483 505 0.93

16 38 9.5 3e+02 2.2 1.4 1 23 540 562 540 562 0.86

17 38 0.0059 0.19 12.3 3.4 1 23 568 591 568 591 0.97

18 38 0.0016 0.051 14.0 0.8 2 23 602 624 601 624 0.90

19 38 0.013 0.4 11.2 0.3 3 23 634 654 633 654 0.98

20 38 0.0001 0.0032 17.8 5.5 1 23 660 682 660 682 0.98

21 38 9.9e-06 0.00031 21.0 0.3 1 23 688 710 688 710 0.98

22 38 0.044 1.4 9.5 0.1 3 23 827 847 825 847 0.95

23 38 0.39 12 6.5 4.2 1 23 853 875 853 875 0.98

24 38 0.0057 0.18 12.3 2.3 1 23 881 903 881 903 0.91

25 38 0.00038 0.012 16.0 3.0 1 23 909 932 909 932 0.98

26 38 0.0012 0.038 14.5 3.7 1 23 944 967 944 967 0.95

27 38 0.0076 0.24 11.9 1.9 3 23 978 998 977 998 0.99

28 38 9e-07 2.8e-05 24.3 1.1 1 23 1004 1026 1004 1026 0.98

29 38 8.5e-07 2.7e-05 24.4 1.2 1 23 1032 1054 1032 1054 0.99

30 38 0.0061 0.19 12.2 0.1 1 22 1060 1081 1060 1081 0.95

31 38 0.98 31 5.3 0.1 2 23 1164 1185 1163 1185 0.94

32 38 0.89 28 5.4 2.2 1 23 1191 1213 1191 1213 0.96

33 38 0.017 0.54 10.8 2.2 1 23 1219 1241 1219 1241 0.90

34 38 0.00026 0.0081 16.6 3.1 1 23 1271 1294 1271 1294 0.94

35 38 0.17 5.2 7.7 0.7 3 23 1305 1325 1304 1325 0.96

36 38 8.7e-05 0.0027 18.1 3.8 1 23 1331 1353 1331 1353 0.96

37 38 1.4e-05 0.00044 20.5 0.8 1 23 1359 1381 1359 1381 0.98

38 38 3.5 1.1e+02 3.6 2.3 1 21 1387 1407 1387 1412 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	38	0.9	28	5.4	8.6	3	23	4	22	2	22	0.95
2	38	0.0038	0.12	12.9	0.9	2	23	45	67	44	67	0.96
3	38	0.00072	0.022	15.2	3.5	1	23	72	94	72	94	0.97
4	38	0.00012	0.0038	17.6	4.4	1	23	104	127	104	127	0.98
5	38	1.3e-05	0.0004	20.7	1.1	2	23	191	212	190	212	0.97
6	38	0.001	0.033	14.6	7.2	1	23	218	240	218	240	0.97
7	38	0.00031	0.0098	16.3	1.0	1	23	246	268	246	268	0.98
8	38	0.0029	0.091	13.3	0.2	2	23	275	297	275	297	0.92
9	38	0.00016	0.0051	17.2	2.0	1	23	302	324	302	324	0.96
10	38	0.017	0.52	10.9	1.9	2	23	335	357	334	357	0.93
11	38	6.5e-05	0.002	18.4	1.3	1	23	364	386	364	386	0.98
12	38	5.7e-06	0.00018	21.8	1.0	2	23	393	414	392	414	0.97
13	38	1.8e-06	5.6e-05	23.4	2.2	1	23	420	442	420	442	0.98
14	38	0.0022	0.069	13.6	1.1	1	23	448	471	448	471	0.97
15	38	3.7	1.2e+02	3.5	0.4	1	23	483	505	483	505	0.93
16	38	9.5	3e+02	2.2	1.4	1	23	540	562	540	562	0.86
17	38	0.0059	0.19	12.3	3.4	1	23	568	591	568	591	0.97
18	38	0.0016	0.051	14.0	0.8	2	23	602	624	601	624	0.90
19	38	0.013	0.4	11.2	0.3	3	23	634	654	633	654	0.98
20	38	0.0001	0.0032	17.8	5.5	1	23	660	682	660	682	0.98
21	38	9.9e-06	0.00031	21.0	0.3	1	23	688	710	688	710	0.98
22	38	0.044	1.4	9.5	0.1	3	23	827	847	825	847	0.95
23	38	0.39	12	6.5	4.2	1	23	853	875	853	875	0.98
24	38	0.0057	0.18	12.3	2.3	1	23	881	903	881	903	0.91
25	38	0.00038	0.012	16.0	3.0	1	23	909	932	909	932	0.98
26	38	0.0012	0.038	14.5	3.7	1	23	944	967	944	967	0.95
27	38	0.0076	0.24	11.9	1.9	3	23	978	998	977	998	0.99
28	38	9e-07	2.8e-05	24.3	1.1	1	23	1004	1026	1004	1026	0.98
29	38	8.5e-07	2.7e-05	24.4	1.2	1	23	1032	1054	1032	1054	0.99
30	38	0.0061	0.19	12.2	0.1	1	22	1060	1081	1060	1081	0.95
31	38	0.98	31	5.3	0.1	2	23	1164	1185	1163	1185	0.94
32	38	0.89	28	5.4	2.2	1	23	1191	1213	1191	1213	0.96
33	38	0.017	0.54	10.8	2.2	1	23	1219	1241	1219	1241	0.90
34	38	0.00026	0.0081	16.6	3.1	1	23	1271	1294	1271	1294	0.94
35	38	0.17	5.2	7.7	0.7	3	23	1305	1325	1304	1325	0.96
36	38	8.7e-05	0.0027	18.1	3.8	1	23	1331	1353	1331	1353	0.96
37	38	1.4e-05	0.00044	20.5	0.8	1	23	1359	1381	1359	1381	0.98
38	38	3.5	1.1e+02	3.6	2.3	1	21	1387	1407	1387	1412	0.90

Sequence Information

Coding Sequence: ATGAAATGCTGTCATATCTGTGGTAAATTTTTTAAACACGATCTCCAAAAACATCTTGTTACTCACACTGAGAAAAAACCATTTAAATCTTTGGTGTTTCATAAAAAACGACATACTAAAGAATACGTTATAAAGTGTGAAAAATGCGGATTCGGTTTTGTGAGGATGTTTGAATACAGAAAACATGTTAAAGTCAAACACGGTGTGAGTAATTTCATTTGTAACGTATGTGGTGTAAGTTGCTGCGATAAAACATCACTTGAACGTCACATTTTCCGGCACGCCGATGATTACGGTAAAAATCCAGGTTTCAAATGTGAACATTGCTCGAAAAGTTTTCCACAAGAACGTTATCTTAAATATCACATTAAACGTATGCATAGAGAAGACAGAAAAAGATACATCTGCGATTTATGTGGCAAAGAAAAGAATGGATGCATACAGGTTACCGAAAATAGCGATAGTTGGAAGACCAGCAGGAAAACGACCGCTGGGGAACCCCCAAAGAGATGGAGGGACAGCTGGCACTCCACATCACAGGAAATGCTACAGCGCAACGATTCTAGTAGTTCTTGTAAAATCTGTGAAAAGGTTTTTAAAGATTCAGAAAGATTAAAGAAACATATGATTTCTCACAGCGAAGCCCGTCCACACTCCTGCGATATTTGTCATAAACGCTTTAAAAGAAAACATGAAGTATCTAATCATATTAAAATCCATAATGGTGGTATTAATTTTCAATGCGATATATGTTCGAAAATATTAAGGTCAAAAGGTTCTTTAAATATCCATAAAAAAAGACATCTGAAGGAGTTCGTAGCTAAATGTGAAATATGCGGACAAGGTTTTGTTACGAATCAAGAATACCAAAATCATGTAGGATCAAAACATGGTAAAACTAATCATATCTGCAATATTTGCGGTAGAAGTTGTTATGATAAAGCCTCACTTCAAGGTCATATGATTCGACACAATAAAGATTATACTTCTAATACAGATATTAAATGTGAAATATGTAACAAAACTTTCCTTCAAGAACGATATTTAAAACACCACTACGTTAGGGTTCACAAAGATGGTGGAAAACGTTACGTTTGCGATCATTGTGGTAAAAAAGTTAATTCAAAACGTAGTCTAAGAGATCATTTATTAATACATCAAGGTTTAAAACCAATAGAATGTAAAGAATGTGGTAAAAAGTTCGCTCTTAGAACTACTTTAAAGCTTCACATGCGCACTCATACTGGTGATAGACCATATGAATGTCCTCAATGTGGTAAATGTTTTACACAAAAAACACCTCTTACAATACATTTAAGATATCATAGTGGCGAACGGCCTTATAGTTGTTCGATTTGTCATAATGGATTTGTTAGTAAAGGTGCTTTATCGATACATCAAAAAAATAAACATAACGAAGAACAGACTGAGGAAAATCACTTGAAATTTACTTGCGAATTATGCAACGAAAAGATATATTCGAGTATTTCATATGCTTTACATTCAATAAAACATTCCATGGACAATAAATATCACTGCCATTATTGCATTTTTAAAACTAGCAAAGTAAAAAGTATAGTAAAACATATGAAATTTCATGTAAAAGATGGCGAGGAATTCCAATGTGAGATTTGTAGATCGACTTTTCCGGAATGTATTCAAGCAATAGAACATAAGAATTTTCATTCGGGTGAAATGCCGTATCGGTGTGAAATTTGTGGTAAACATTTTATGTTCTCTTGGTTGATGTTTACGCATCGCAGATTATTTCATCCGATTATAAAAGAGGATCCGTCAAGTTTAGTATGTGATATTTGCAATATGTCGTTTGGTACCAGATCTGGATTACGAAAACATAACTTCCGTAAACATAATAAGTGCCCATCAGAAAATCCGTTATGTGAAATTTGCGGTAAAAGTCTAGCTAATAGAGAAACTTTTAAATTCCATATACGTATCCATACCGGAGAAAAACCTCATACTTGTAAAACATGCGGAAAATGTTTTAGAAAAAAAGGGCTTTTGGTAGAACACGAACGCACACACACTGGGGAAAAACCGTTTGTTTGTCCTTATTGTCAAAAAGGATTTTCACAACGAGCTCCTTTAAAAATTCACACTAGAATACATACTGGAGAAAGGCCTTATATTTGTGGATTTTGTGGAAAAGGGTCCTACTTCGATACAAGTATTTTAAATAAGTTACTTTATGGACCAGACCTAACTATCACCCCAATAAAATCAGAACCAAACGATGAAATTTTCGACGAATCTCCATATAAGTGCAATGGTTTTAATAATAGTATTAACAAAAATGACAACCAAAAATCACAATCTTCTGTTATTATCCCAAATGTATCGAAATTAATAGCCGATAACATATTAAATTGTTTACAAAAGAAGAATAAATTCAAATCTATACCCGACGAGAAAACTCTACCTCATTCCCAACCAGTCGAGTTAGATGAGCCAATAAATTGTGAAATTTGTGATGTAACTTATAAAAACAACGTAGCATTCGCACTTCATTCTAACATTCACAGCGAAGATGGGAAATATACTTGTCACCTCTGCGATTTTCGAAACTCTTCAAAATATCATGTAGAAATGCATATTCGAGCTCATGAAGGCACAACTAAATACAAATGTAAAATATGTGATAAAGCTTTCACAGTCAGTACACACGCTATTGAACATAAATACTTCCACACCGGTGAAAAACCTTTTGAATGCGACATCTGCGGGAAACATTTTATGTTTTCCTGGTTTCTCACTTCTCACAGACGCACTCAACATTGGGAACTAGTCACTGGAAGTCCTCTAGTCAAGTACGATTGTACTATTTGTAATAAACATTACACCTCTTCCACTGGTCTTAAACGACACAACCAAAGTAAACATAATTCCACCGGAATAGATCCTTCAGTTCTTTGCGATATTTGTGGTAAACGACTATCTAGTAAAGAAAAATTAAAGTTCCATCGACGTACCCATACAGGCTATAAACCATATTCGTGTGAAATCTGTACGAAAAGTTTTTCAAGGAAAGAACAGCTTAAAGAACACGAGCGGGTTCATACCGGTGAAAAACCGTATAAATGTCAGTATTGTGGTAAAGGTTTTACACAAAGATCGCCCTTAAGAATACATGAAAGAACTCATACTGGGGAAAGACCGTATATATGCAAAATTTGTAATAAAGGTTTTATTTCGAAAGGTGTTATGGATACACATATGAAAACTTGTTCAGGAAGAGATCTCACGTATGGAAAATTTAAATGCTATTTGTGTGGATTACATTCAAAATTATCCACGATAGAAATAACAGAACATATGCAAATGCATATGAATGGTACTATTCACCGTTATAGGGAAGATACGGATTTTAAACCTCCAATAAAAGCAAAACGTAAAAAACGGACAATAAAAGAACGTAAACTGCGAAAAGATGTATCACATCCACCTCCTGTAGAACTGGATGAACCAATTCAATGCGACGTTTGTAGTGGCACTTATAAAAATAACGTAGCTTTCGCCTTACATTCCATTAGTCATAGTGGTGATGGAAAATATGCTTGTCATATTTGTAATTACCGAAATGCCTCAAAATATCACATAGAAATGCACGTAAGAGCACATGAAGGTACTACTAGCTATAAATGTGAAATCTGTAATAAAGCATTTACAGTTAGTACTCATGCTTTGGAACATAAATATTTCCATTCCGGGGAAAAAACCGTTTCAATATTTTTAGCGTCTCATCGACGTACTCAACACTGGGAAATTATAACTGGTACTCCACTTATTAAATACGATTGTACTATTTGTAATAAACATTATACGTCCTCAAGTGGCCTTAAACGCCATAATTTGAGAAATCATAATTATGAAGGTATAGATACCTCTGTACTGTGTGATATATGTGGTAAAAAAATATCTAGCAACGAAAAGTTGAAATTTCATAGTAGAGTTCATACCGGTTACCGTCCGCATGCTTGTGAAGTATGTGGGAAATGTTTCTCTACCAAAGAACAGAAAAAAGAACATCTTAGAGTTCATACTGGAGAGAAACCGTATATTTGTAAATTTTGTGGTAAAGGTTTTACACAACGATCGCCATTAAAGATACATGAAAGATCGCATACTGGAGAGGCACCTTATATTTGTATACTTTGTACCAGAGGATTTATTTCTAAAAGTGCGATGGATAATCATATGAAACATTGTAAACTTCATATACCTTTTGATTAA
Protein Sequence: MKCCHICGKFFKHDLQKHLVTHTEKKPFKSLVFHKKRHTKEYVIKCEKCGFGFVRMFEYRKHVKVKHGVSNFICNVCGVSCCDKTSLERHIFRHADDYGKNPGFKCEHCSKSFPQERYLKYHIKRMHREDRKRYICDLCGKEKNGCIQVTENSDSWKTSRKTTAGEPPKRWRDSWHSTSQEMLQRNDSSSSCKICEKVFKDSERLKKHMISHSEARPHSCDICHKRFKRKHEVSNHIKIHNGGINFQCDICSKILRSKGSLNIHKKRHLKEFVAKCEICGQGFVTNQEYQNHVGSKHGKTNHICNICGRSCYDKASLQGHMIRHNKDYTSNTDIKCEICNKTFLQERYLKHHYVRVHKDGGKRYVCDHCGKKVNSKRSLRDHLLIHQGLKPIECKECGKKFALRTTLKLHMRTHTGDRPYECPQCGKCFTQKTPLTIHLRYHSGERPYSCSICHNGFVSKGALSIHQKNKHNEEQTEENHLKFTCELCNEKIYSSISYALHSIKHSMDNKYHCHYCIFKTSKVKSIVKHMKFHVKDGEEFQCEICRSTFPECIQAIEHKNFHSGEMPYRCEICGKHFMFSWLMFTHRRLFHPIIKEDPSSLVCDICNMSFGTRSGLRKHNFRKHNKCPSENPLCEICGKSLANRETFKFHIRIHTGEKPHTCKTCGKCFRKKGLLVEHERTHTGEKPFVCPYCQKGFSQRAPLKIHTRIHTGERPYICGFCGKGSYFDTSILNKLLYGPDLTITPIKSEPNDEIFDESPYKCNGFNNSINKNDNQKSQSSVIIPNVSKLIADNILNCLQKKNKFKSIPDEKTLPHSQPVELDEPINCEICDVTYKNNVAFALHSNIHSEDGKYTCHLCDFRNSSKYHVEMHIRAHEGTTKYKCKICDKAFTVSTHAIEHKYFHTGEKPFECDICGKHFMFSWFLTSHRRTQHWELVTGSPLVKYDCTICNKHYTSSTGLKRHNQSKHNSTGIDPSVLCDICGKRLSSKEKLKFHRRTHTGYKPYSCEICTKSFSRKEQLKEHERVHTGEKPYKCQYCGKGFTQRSPLRIHERTHTGERPYICKICNKGFISKGVMDTHMKTCSGRDLTYGKFKCYLCGLHSKLSTIEITEHMQMHMNGTIHRYREDTDFKPPIKAKRKKRTIKERKLRKDVSHPPPVELDEPIQCDVCSGTYKNNVAFALHSISHSGDGKYACHICNYRNASKYHIEMHVRAHEGTTSYKCEICNKAFTVSTHALEHKYFHSGEKTVSIFLASHRRTQHWEIITGTPLIKYDCTICNKHYTSSSGLKRHNLRNHNYEGIDTSVLCDICGKKISSNEKLKFHSRVHTGYRPHACEVCGKCFSTKEQKKEHLRVHTGEKPYICKFCGKGFTQRSPLKIHERSHTGEAPYICILCTRGFISKSAMDNHMKHCKLHIPFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -