Avir003043.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- ham_2
- Assembly
- None
- Location
- GWHAMMQ00000142:491797-526946[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.19 1.5e+02 2.5 0.0 17 44 92 116 84 116 0.86 2 9 0.016 13 5.9 1.7 18 38 123 140 118 146 0.86 3 9 0.0069 5.6 7.1 1.0 15 43 149 174 144 175 0.84 4 9 0.079 64 3.7 0.1 19 38 182 198 179 203 0.88 5 9 2.5 2e+03 -1.1 4.0 5 38 197 226 195 231 0.75 6 9 9.3 7.5e+03 -3.0 6.2 6 38 226 255 221 257 0.73 7 9 2.1e-05 0.017 15.1 0.2 18 41 542 562 532 564 0.88 8 9 1.8e-05 0.014 15.4 2.0 17 44 569 593 563 593 0.88 9 9 0.33 2.6e+02 1.7 2.5 13 41 594 619 591 620 0.84
Sequence Information
- Coding Sequence
- ATGGATTACCGGAATTGGTTGAAGTTCATAAAAAATGCTCAATCAAAAACTGAAGCAAATTTAAAATACATTTTACAAGGAGGACAGCTTTGGTATGAAACTTTCAAAGATATACCTAGTGATACAGAACTAGTTTTAATACCTAAGGAGCCTCTTAGTCTACAAGATATGTTTGGAGATTCTATGTCTGCTGATGAAAGATCAGATCGAGAGACTGCATCACAACATAGTGGAACATTTGATGAAAGAGAAGACGATGAAGATGTTCCTGAAAATCGTTGTTATGTTTGTGATCAGATCTTCAACGATATAGATAAATTGGATGAACACTTAGTAACAAAACACAACTATAGGCGAGACGAACATCAGTGTGACTATTGTTCAAAAGCCTATTCTTATCGTCCCTGTCTTATTAAACATCGAGCTATCAAGCACGGAGAAACCAAAAAGTACCATTGCGAGAATTGTCCAAGGGTATTTACGGATCCTAGCAACTTACAGAGGCACATAAGAACCCAACACGTTGGAGCCAGATCTCATGCATGTCCAGAGTGCGGGAAAACATTTGCATCATCGTCTGGTTTAAAGCAACATACACATATCCATTCTTCTGTGAAGCCGTTTCAATGCGAAGTTTGTTTTAAGGCATATACGCAATTCTCAAATTTGTGTCGACACAAACGAATGCACGCGGATTGTCGAATGCAAATTAAATGTGTTAAATGTGGACAATCATTTTCAACGGTAACATCTTTATCAAAGCATAAACGTTTCTGTGATTCAACTACACCTACACCATTTGGAAATCAGCCTCATTTACCAGTTAGTCCGGTCCCAATGGCAGGAAGTGATTCATTTTCGATATATCGCCCTGGTTGTCCGTTACCATTCTTCTCTCCACAATTAACATCTTACCATTTCTTTCCTTCGGCATCAATAATTCATCCATTGTTTTTCAATCAGATCTCGAAACCAGCTGACGTTGTGATGGAGCCTAAAAGGAAGAAAATCGATAATGTTTCGCCTAAGTTAGATGTTTCTACTAAAGCTCCTGTAAATAATGATATATTTGTACCAAAGCTTTCTTCTCCAAAAGATATGTATAGTAACAGTAAGGATAATTTGGATTCTAATAAATCTAGTCTCGATCTATTGCCTCCACTTCAAAAAGGTGATTCACAGAAAGATCTCATTCATGCTACAACTGAGGCAGTAAGTGCAAATAGTGAAGAAAGTGACAAACCTTTAGATCTTAGTGGTTGGAAGAAGAATATTTTCTTACAATCAACGTGCCATCAACCAGAATCATCTGTTGTTCCGTATAGTTCAGAAAACGTTGGCTTATTGGATGTATTTGATGGAAATAATGACAAAAAGAAGATGTTTACACCACAAATGATCTGCCCGAGGCCTACGCACCCAGTAATTCCTGACATATGTCGTAATTTTGGTTATAATTACCAAAACAATCCAGAAAGTGACAAATTGTTTCCGTTTTTTCCTCACAGATTTCCTTTTTTAAATGGATTCCAGCATCAACGAATGGACATGATCCGATCAAATGTAAAACCATTTCAAGATGTAATGCATAACTATGGACAAGGCAAAATAAAGGATCGATACGCCTGCAAGTTTTGCGGTAAAATCTTTCCAAGATCTGCTAACTTAACACGCCACTTACGAACTCACACTGGAGAACAACCATACAAATGTAGATATTGCGAACGTTCCTTTAGTATTTCAAGCAATTTACAACGTCATGTTCGAAATATACATAACAAAGAAAAACCCTTTAAATGTACCTTATGTGAAAGATGCTTCGGTCAGCAAACTAACCTTGATAGACACCTTAAAAAGCATGAAGTTGATGAAGGAAATGGGTCCATAGCTCTTGTAGATTCCCCCAGCAGTAGCAACGAAAACGAAAGAGAGGACGCCTGTTTTGATGAAATTCGGTCATTTATGGGAAAAGTCACTTATGGCAGTACTGAATATTACAACATGCGAGAATTCGTTTCGCCGTCGAACAATAATATTGATCTAGTTAAAAAAGAAGAAGATGATTCAGAAACTAATTCAGATGCAGGAGAAGAATACTTACCAACTAAATTGAATTCATCTGATGTAAACTGCAAACCGGAAAAGGAAGAAATGTTAAACAATAATGACCAATCTGTGAAAGTATCGACTTAA
- Protein Sequence
- MDYRNWLKFIKNAQSKTEANLKYILQGGQLWYETFKDIPSDTELVLIPKEPLSLQDMFGDSMSADERSDRETASQHSGTFDEREDDEDVPENRCYVCDQIFNDIDKLDEHLVTKHNYRRDEHQCDYCSKAYSYRPCLIKHRAIKHGETKKYHCENCPRVFTDPSNLQRHIRTQHVGARSHACPECGKTFASSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCVKCGQSFSTVTSLSKHKRFCDSTTPTPFGNQPHLPVSPVPMAGSDSFSIYRPGCPLPFFSPQLTSYHFFPSASIIHPLFFNQISKPADVVMEPKRKKIDNVSPKLDVSTKAPVNNDIFVPKLSSPKDMYSNSKDNLDSNKSSLDLLPPLQKGDSQKDLIHATTEAVSANSEESDKPLDLSGWKKNIFLQSTCHQPESSVVPYSSENVGLLDVFDGNNDKKKMFTPQMICPRPTHPVIPDICRNFGYNYQNNPESDKLFPFFPHRFPFLNGFQHQRMDMIRSNVKPFQDVMHNYGQGKIKDRYACKFCGKIFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCTLCERCFGQQTNLDRHLKKHEVDEGNGSIALVDSPSSSNENEREDACFDEIRSFMGKVTYGSTEYYNMREFVSPSNNNIDLVKKEEDDSETNSDAGEEYLPTKLNSSDVNCKPEKEEMLNNNDQSVKVST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057049;
- 90% Identity
- iTF_00057049;
- 80% Identity
- iTF_00057049;