Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000769:84145-90596[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.1e-14 1.7e-11 44.0 0.9 1 44 7 50 7 50 0.97

2 12 3.3e-08 2.7e-05 24.1 0.0 2 43 110 152 109 153 0.98

3 12 2.8e-11 2.2e-08 33.9 1.3 1 44 275 318 275 318 0.97

4 12 3e-16 2.5e-13 49.8 1.4 1 44 371 414 371 414 0.98

5 12 1.2 9.6e+02 -0.1 0.1 12 24 481 493 475 497 0.80

6 12 0.64 5.2e+02 0.8 0.1 18 29 552 563 547 570 0.81

7 12 0.052 42 4.2 1.4 14 29 588 603 583 613 0.77

8 12 5.3 4.2e+03 -2.2 1.1 15 28 619 632 604 644 0.72

9 12 0.013 10 6.2 5.2 15 38 647 671 635 672 0.77

10 12 0.0013 1.1 9.3 0.2 18 43 685 712 676 713 0.71

11 12 0.13 1e+02 3.0 5.2 18 41 713 733 707 734 0.89

12 12 0.11 89 3.2 1.0 19 40 742 760 740 762 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.1e-14	1.7e-11	44.0	0.9	1	44	7	50	7	50	0.97
2	12	3.3e-08	2.7e-05	24.1	0.0	2	43	110	152	109	153	0.98
3	12	2.8e-11	2.2e-08	33.9	1.3	1	44	275	318	275	318	0.97
4	12	3e-16	2.5e-13	49.8	1.4	1	44	371	414	371	414	0.98
5	12	1.2	9.6e+02	-0.1	0.1	12	24	481	493	475	497	0.80
6	12	0.64	5.2e+02	0.8	0.1	18	29	552	563	547	570	0.81
7	12	0.052	42	4.2	1.4	14	29	588	603	583	613	0.77
8	12	5.3	4.2e+03	-2.2	1.1	15	28	619	632	604	644	0.72
9	12	0.013	10	6.2	5.2	15	38	647	671	635	672	0.77
10	12	0.0013	1.1	9.3	0.2	18	43	685	712	676	713	0.71
11	12	0.13	1e+02	3.0	5.2	18	41	713	733	707	734	0.89
12	12	0.11	89	3.2	1.0	19	40	742	760	740	762	0.79

Sequence Information

Coding Sequence: ATGTCGGTCTCACGAAGATCCGCTATATGGAATGTATTCACTGAAACCTATAAATCTGATTTTATAGCCACCTGTAATATCTGTTCTCAAGAATTTTCATACCGATCCACAACAACAAATTTAATGAAACATCTGAAAAGGAAACATCCTACGGTTAGTTTGGACCTAAATTCTACTACAGAGAACTCCAATCAAGTTATAGTTATAGAAAGACAACTGGATCTGGATAATGACTGTGAAGTAAATTCGTTTAAAGTTGAACTCAAAGCTGCTTCCTCAGAGGAGAGTACGAACTATGTAGTTTTAGAAGCAGGTAAAAAAGTGTTACCGGTGTGGACTTTTTTTTCAAAACTTACGGATTCAGATTATTTAGCTGCGTGTACCTATTGTTTAGAAGAAATTCCGTTTGAATTTGGTAACACAAATGAGTTAATCAAACATCTTGAAATGAAACATTTTGATATTTTGACGGATATTACAATAGAAGGAGATGATAATTCAGCTCTTAAATACACCGAATTGGACATAATCCCTAAAAAAAATTCTCATTCAGAAAGTATTACACAAAATGTCTGTGATTTTAAAGAAGTGGCAAATAATGAACATGCTTATCACAAAATTATTGATACTCAAATTATTAGCAATCCTGAGAGCTCTTCCAAAATTGTAGAAAAAAGCGAATCTCCTTTAAATAACTCGGGCAGCGTTGTAGATGATTTCTGGACTGAACAAGATAACTCTGATGATGATCCTGAATTTAGACCAACTCCTTCACCCGTTGAAGAAGAATCTGATAAAGCTGCTGCTAGTTCGAGGAAAAGGTCACATATTTGGAATGTATTTACTGAAAAGCCAGACGCTGAATATGTAGCTGTATGCAATGTTTGCAATCAGGATTTTTGTTACAGAAGTACCACAAATAATTTAAAAAAACATTTTCAACGAAAACATCCAAATATTAATCTAGATCAAAAAATAGAACCGAGTATTAAATCAGAAATGTGTGAGTTTACAGATAAATTTGAAAATAGGAACAGCAAGGATTCTTCGGATGATGAACAAGATGACAGTAAAAAGCTTCTAGTGGAAAAACCTGGTAAGAGAAAACCATCTCAGTTGTGGAATTATTTTACAAAAAAGAAACAACGACCGTATGTGGCCATTTGTAATATTTGTAAAAAGGAATTAGGGTACAGATCTACAACGTCAAATCTAAAAAAGCATTTAGAGAGGAAGCATCCTCATATTGGACTTGTCAAAATGGAAGTTGAAGAAAATAAAAAAGAACTTGGCGTCCCGTTAAAACCCCTAAAAACATGTTTAATATGCTTAGAAAATGATGCAAATGAATCTAAAGCCTTTCAACTAGTTAACCAGTGTGATAGTGAAGAAAAATCTTTAATCGAAAAAATACAAGAAATTTTAAATCAACAAATAGTCATTGATGAGTCTCATGTAGTTTGTCAACTATGTGTTAGTGATATAGAAAAAGTTTTACAATTTAAAGATAAAATGATCAAAGCTTTTGAATTTTGGAGTAAAATTGAACCTGAACCAGAGCCTGAGTCAGATACTGCTTTTGATGCATGTGCTGATGATTTTAAAAATTCGGACTATAGTGATTTGGAAGATGGTGAAAGTTTGGCACAGTTTACTTGTACAAAATGTGAAAAAGTATTTCCATCTTCATCAATCATGCTAAAACATAACTGTGGTGCACCTAGGAAAATTAAATCAGAAACCAATGGGAAAGTGAATTCCGATAATAAATTTTACTGTGAGCATTGCGGTAAAGGTTTTTTAATTAAGTGGAAGCTAACAAAACATATAAAAAAGTGCCAATCGTATATTCCTAAACAGTTTACTTGTAGTATGTGTGATCGTGTTTTTAAAAAAGCATACCATCTTCGAGAACATATGGCTTCTCATACTGGTGAACGTAATTATAGTTGTAATATATGTGGTAAAACTTTCCAGAGATCTTCATCGAAACATAAACATATGAGAAGTCACAATGCAAAGCCTGGTGAAAAATCTAAGAAAACGCCATTTTTGTGCACAATTTGTGGCAAAAGTTTTCCATATTCAAATGGAGCTTCCAGGCACATGAGGGTGCATTTAGGAGAGAGGAGACACGAGTGTCATATTTGTCTTAAGAAATTCAGTCAAACCACTCATTTGAAGGTTCATTTAAGGACCCACTCTGGAGAACGCCCTTATGGTTGTATGATTTGCGGTCGAACATTCTCATTAAACGCTAGTTTAAGAAAACATATGAGACTCCATGTTGGTGCGGGAGAGTTTGGAAAATTGGTTAAAAATTTAGGGGCAAATCTAGAAACGAATATGGAAACAAATTTAGGATCCATTGAAACTAATATTCCGGATCCTTTAGAGGATAATTTAGGAGAGAATATAGAACATATAGATAATGATTTGGGAGCAAATATAACGCATGTTACTGATGATGGAATACCTGTATTATCGCATCATGATATTTCTATTCAAGGAAATCATTAA
Protein Sequence: MSVSRRSAIWNVFTETYKSDFIATCNICSQEFSYRSTTTNLMKHLKRKHPTVSLDLNSTTENSNQVIVIERQLDLDNDCEVNSFKVELKAASSEESTNYVVLEAGKKVLPVWTFFSKLTDSDYLAACTYCLEEIPFEFGNTNELIKHLEMKHFDILTDITIEGDDNSALKYTELDIIPKKNSHSESITQNVCDFKEVANNEHAYHKIIDTQIISNPESSSKIVEKSESPLNNSGSVVDDFWTEQDNSDDDPEFRPTPSPVEEESDKAAASSRKRSHIWNVFTEKPDAEYVAVCNVCNQDFCYRSTTNNLKKHFQRKHPNINLDQKIEPSIKSEMCEFTDKFENRNSKDSSDDEQDDSKKLLVEKPGKRKPSQLWNYFTKKKQRPYVAICNICKKELGYRSTTSNLKKHLERKHPHIGLVKMEVEENKKELGVPLKPLKTCLICLENDANESKAFQLVNQCDSEEKSLIEKIQEILNQQIVIDESHVVCQLCVSDIEKVLQFKDKMIKAFEFWSKIEPEPEPESDTAFDACADDFKNSDYSDLEDGESLAQFTCTKCEKVFPSSSIMLKHNCGAPRKIKSETNGKVNSDNKFYCEHCGKGFLIKWKLTKHIKKCQSYIPKQFTCSMCDRVFKKAYHLREHMASHTGERNYSCNICGKTFQRSSSKHKHMRSHNAKPGEKSKKTPFLCTICGKSFPYSNGASRHMRVHLGERRHECHICLKKFSQTTHLKVHLRTHSGERPYGCMICGRTFSLNASLRKHMRLHVGAGEFGKLVKNLGANLETNMETNLGSIETNIPDPLEDNLGENIEHIDNDLGANITHVTDDGIPVLSHHDISIQGNH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00057199;
90% Identity: iTF_00057199;
80% Identity: iTF_00057199;