Avir002247.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000129:1093172-1100148[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.7e-14 1.3e-11 44.3 0.9 1 44 7 50 7 50 0.97 2 9 2.7e-08 2.2e-05 24.4 0.0 2 43 110 152 109 153 0.98 3 9 2.2e-11 1.8e-08 34.2 1.3 1 44 275 318 275 318 0.97 4 9 2.4e-16 2e-13 50.1 1.4 1 44 371 414 371 414 0.98 5 9 0.97 7.8e+02 0.2 0.1 12 24 481 493 475 497 0.80 6 9 0.53 4.2e+02 1.0 0.1 18 29 552 563 547 570 0.81 7 9 0.043 35 4.5 1.5 14 29 588 603 582 613 0.77 8 9 5.1 4.1e+03 -2.1 1.2 15 28 619 632 605 645 0.73 9 9 0.013 10 6.2 5.7 15 38 647 671 632 683 0.81
Sequence Information
- Coding Sequence
- ATGTCGGTCTCACGAAGATCCGCTATATGGAATGTGTTCACTGAAACCTATAAATCTGATTTTATAGCCACCTGTAATATCTGTTCTCAAGAATTTTCATACCGATCCACAACAACAAATTTAATGAAACATCTGAAAAGGAAACATCCTACGGTTAGTTTGGACCTAAATTCTACTACAGAGAACTCCAATCAAGTTATAGTTATAGAAAGACAACTGGATCTGGATAATGACTGTGAAGTAAATTCGTTTAAAGTTGAACTCAAAGCTGCTTCCTCAGAGGAGAGTACGAACTATGTAGTTTTAGAAGCAGGTAAAAAAGTGTTACCGGTGTGGACTTTTTTTTCAAAACTTACGGATTCAGATTATTTAGCTGCGTGTACCTATTGTTTAGAAGAAATTCCGTTTGAATTTGGTAACACAAATGAGTTAATCAAACATCTTGAAATGAAACATTTTGATATTTTGACGGATATTACAATAGAAGGAGATGATAATTCAGCTCTTAAATACACCGAATTGGACATAATCCCTAAAAAAAATTCTCATTCAGAAAGTATTACACAAAATGTCTGTGATTTTAAAGAAGTGGCAAATAATGAACATGCTTATCACAAAATTATTGATACTCAAATTATTAGCAATCCTGAGAGCTCTTCCAAAATTGTAGAAAAAAGCGAATCTCCTTTAAATAACTCGGGCAGCGTTGTAGATGATTTCTGGACTGTACAAGATAACTCTGATGATGATCCTGAATTTAGGCCAACTCCTTCACCCGTTGAAGAAGAATCTGATAAAGCTGCTGCTAGTTCGAGGAAAAGGTCACATATTTGGAATGTATTTACTGAAAAGCCAGACGCTGAATATGTAGCTGTATGCAATGTTTGCAATCAGGATTTTTGTTACAGAAGTACCACAAATAATTTAAAAAAACATTTTCAACGAAAACATCCAAATATTAATCTAGATCAAAAAATAGAACCGAGTATTAAATCAGAAATGTGTGAGTTTACAGATAAATTTGAAAATAGGAACAGCAAGGATTCTTCGGATGATGAACAAGATGACAGTAAAAAGCTTCTAGTGGAAAAACCTGGTAAGAGAAAACCATCTCAGTTGTGGAATTATTTTACAAAAAAGAAACAACGACCGTATGTGGCCATTTGTAATATTTGTAAAAAGGAATTAGGGTACAGATCTACAACGTCAAATCTAAAAAAGCATTTAGAGAGGAAGCATCCTCATATTGGACTTGTCAAAATGGAAGTTGAAGAAAATAAAAAAGAACTTGGCGTCCCGTTAAAACCCCTAAAAACATGTTTAATATGCTTAGAAAATGATGCAAATGAATCTAAAGCCTTTCAACTAGTTAACCAGTGTGATAGTGAAGAAAAATCTTTAATCGAAAAAATACAAGAAATTTTAAATCAACAAATAGTCATTGATGAGTCTCATGTAGTTTGTCAACTATGTGTTAGTGATATAGAAAAAGTTTTACAATTTAAAGATAAAATGATAAAAGCTTTTGAATTTTGGAGTAAAATTGAACCTGAACCAGAGCCTGAGTCAGATACTGCTTTTGATGCATGTGCTGATGATTTTAAAAATTCGGACTATAGTGATTTGGAAGATGGTGAAAGTTTGGCACAGTTTACTTGTACAAAATGTGAAAAAGTATTTCCATCTTCATCAATCATGCTAAAACATAACTGTGGTGCACCTAGGAAAATTAAATCAGAAACCAATGGGAAAGTGAATTCCGATAATAAATTTTACTGTGAGCATTGCGGTAAAGGTTTTTTAATTAAGTGGAAGCTAACAAAACATATAAAAAAGTGCCAATCGTATATTCCTAAACAGTTTACTTGTAGTATGTGTGATCGTGTTTTTAAAAAAGCATACCATCTTCGAGAACATATGGCTTCTCATACTGGTGAACGTAATTATAGTTGTAATATATGTGGTAAAACTTTCCAGAGATCTTCATCGAAACATAAACATATGAGAAGTCACAATGCAAAGCCTGGTGAAAATCTAAGAAAACGCCATTTTTGTGTACAATTTGTGGCAAAAGTTTTCCATATTCAAATGGAGCTTCCAGGCACATGA
- Protein Sequence
- MSVSRRSAIWNVFTETYKSDFIATCNICSQEFSYRSTTTNLMKHLKRKHPTVSLDLNSTTENSNQVIVIERQLDLDNDCEVNSFKVELKAASSEESTNYVVLEAGKKVLPVWTFFSKLTDSDYLAACTYCLEEIPFEFGNTNELIKHLEMKHFDILTDITIEGDDNSALKYTELDIIPKKNSHSESITQNVCDFKEVANNEHAYHKIIDTQIISNPESSSKIVEKSESPLNNSGSVVDDFWTVQDNSDDDPEFRPTPSPVEEESDKAAASSRKRSHIWNVFTEKPDAEYVAVCNVCNQDFCYRSTTNNLKKHFQRKHPNINLDQKIEPSIKSEMCEFTDKFENRNSKDSSDDEQDDSKKLLVEKPGKRKPSQLWNYFTKKKQRPYVAICNICKKELGYRSTTSNLKKHLERKHPHIGLVKMEVEENKKELGVPLKPLKTCLICLENDANESKAFQLVNQCDSEEKSLIEKIQEILNQQIVIDESHVVCQLCVSDIEKVLQFKDKMIKAFEFWSKIEPEPEPESDTAFDACADDFKNSDYSDLEDGESLAQFTCTKCEKVFPSSSIMLKHNCGAPRKIKSETNGKVNSDNKFYCEHCGKGFLIKWKLTKHIKKCQSYIPKQFTCSMCDRVFKKAYHLREHMASHTGERNYSCNICGKTFQRSSSKHKHMRSHNAKPGENLRKRHFCVQFVAKVFHIQMELPGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057199;
- 90% Identity
- iTF_00057199;
- 80% Identity
- iTF_00057316;