Avir004533.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001760:144923-146328[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-08 2.4e-05 23.9 0.0 3 45 21 63 19 63 0.89 2 2 8.3 2.7e+03 -1.8 0.1 14 22 143 150 137 150 0.59
Sequence Information
- Coding Sequence
- ATGCCACGAAAATACAAAAGAAAGGAAGGAGTGCGAGCTCGAAAATGTTCTTGGACTACAGAACAATTGCAGTCAGCTTTCGATGAAGTGGACAGAAATACCATGGGGATAAACAAAATATCCCGACAGTTTGGAATTCCATCAAGAACATTGCGAAGACGTTATGCTGCTAAAAATACAACGAAGCAGACACTGGGAAAACATCCTATCTTGGATTTTGACAATGAAAAAAGGCTAGTAAAGCACATTCTAAAGCTTGGTGATGCAGGGTTTCCCCCAAATAGACAATCCATACGTATGTTAGCTTATCAATTTGCTGAAAAGCTAGAGCTAAAACATAATTTTGATCACGATAAAGAAATAGCTGGAGCTGCATGGTTCAAAAGTTTTATTGAACGAAATCCAGAGCTGTCTATTAGACAAGCTGAAGGTTTATCTGTGGCTAGAGCCAAGGGTCTGAGTAGAGAAGAAATAAATAACTTTTATGATCTTTTGATCAAAGTCTTGACCGAAAATGATCTGTTAGACAAACCGGAAAGATTATACAATATGGATGAATCCGGAATCCAATTGAATAATAAACCCGGAAAAGTCGTAGCAAAAAAAGGTACCAAAGTCGTCAATTCAGTCACATCTGCCGAGAAAGGTGAAACAATGACAATCGTTGGTTGTTGCAATGCAATTGGTAATTTTCTTTCACCAGTTCTTATAATAAAAGGTGTGAATAAGAAACCAGAATTATGTAGAATTATATGCTAA
- Protein Sequence
- MPRKYKRKEGVRARKCSWTTEQLQSAFDEVDRNTMGINKISRQFGIPSRTLRRRYAAKNTTKQTLGKHPILDFDNEKRLVKHILKLGDAGFPPNRQSIRMLAYQFAEKLELKHNFDHDKEIAGAAWFKSFIERNPELSIRQAEGLSVARAKGLSREEINNFYDLLIKVLTENDLLDKPERLYNMDESGIQLNNKPGKVVAKKGTKVVNSVTSAEKGETMTIVGCCNAIGNFLSPVLIIKGVNKKPELCRIIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00404851;
- 90% Identity
- iTF_00056498;
- 80% Identity
- -