Avir014305.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000689:246658-247308[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-09 9.9e-07 28.4 0.0 2 39 25 61 24 65 0.89 2 2 4.1 1.3e+03 -0.9 0.0 15 23 138 146 135 150 0.76
Sequence Information
- Coding Sequence
- ATGTCAAAAGTACCGAAGAAAAACCATAAAACCAGAGTAGAAAAGTTGAGTAAAACGAAATTTCAGTACTCACCTACAAAAGTAAATCTTGCTTTAAATGCCATATCTGAGGGAATGGCTGTGGCCACAGCAAGTCGTAACTTTAATGTACCGAGAACTACTTTGCGTAATAAAATATCCGGAAAGTCTCCAAGAGATTCAAGGCACTGCGGATTCGATTCTCACTTGGGAAAAGAGACTGAAGACCGCCTAGTCGAATTGATATTAAAATGTGCGAAGATGGGATTTCCAATAGACAAAGACGGGCTCCTGACTTCAGTACAAAAACTTGTTCGAGAGGCAAATATTCAAACTCCTTTTGTCAATGGTCGTCCTGGCAAAAAATGGTACTACAGCTTCCTTAATAGACACAAACAACTTTCTCAGAAGAAAGCCGAATACATTCACGGTGGTAGAGGCGCAGTAACTGAAGAGAAAATCCGTAAATGGTTCGACGAGATTCATACGACTTTAAGCGATATCGATGCAACCAGTATATTAGAAAATCCGCAAAGGATCTTTAATATGGATGAAACATTTATAAAGTTTTTTCATGTGTATTACTTATTTTTGTTACCAGAAAGTTATTTTGATTTACTTACAATTATGTAG
- Protein Sequence
- MSKVPKKNHKTRVEKLSKTKFQYSPTKVNLALNAISEGMAVATASRNFNVPRTTLRNKISGKSPRDSRHCGFDSHLGKETEDRLVELILKCAKMGFPIDKDGLLTSVQKLVREANIQTPFVNGRPGKKWYYSFLNRHKQLSQKKAEYIHGGRGAVTEEKIRKWFDEIHTTLSDIDATSILENPQRIFNMDETFIKFFHVYYLFLLPESYFDLLTIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01047123;
- 90% Identity
- iTF_01047123;
- 80% Identity
- -