Avir008812.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000324:16714-18023[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-10 1.9e-07 30.7 0.0 2 41 13 51 12 55 0.88
Sequence Information
- Coding Sequence
- ATGGATAAAGCTTTACAGAAAAAAAGGCGATGGAATCCAGACAACATGATCGCTGCTTTAGAGGCTATACGGAACGGTAGCAAAATAAAGACAGCTGCTAAGAACTTTGGTGTCCCAGAATCCACTATTAGGGATCGATTGAAATTAGGCGGGGATTATAATCCGCCTATGGGCAGAAAAGCTACATTTTCTAAAGATGATGAGAAAGAGATTGTCGATTTTATCACTTTAATGGCAAAAAAGTTTTATGGAATTACGCAACTACAGCTTCGTAAATTAGCTTATGACTTTGCCGTGGCAAAAAATATTAAAAATATTTTTTCTTCTGAAAAAGGAATGGCAGGAAAGTGTTGGGTTTATTCCTTTTTGAAAAGAAATCCCGAGATTTCTTTAAGGCTCCCAGAACCAACGAGCCTAAATAGAATTTTGGGATTTAATAAATCTGAAATAAACATTTTTTTTCTAACCTTGAGATTCTTATGGCTAAGCACAATTTCCCAGCCAATCGCATATTCAATGTTGATGAAACTGGCATCAGTAATGTATTACTTATAG
- Protein Sequence
- MDKALQKKRRWNPDNMIAALEAIRNGSKIKTAAKNFGVPESTIRDRLKLGGDYNPPMGRKATFSKDDEKEIVDFITLMAKKFYGITQLQLRKLAYDFAVAKNIKNIFSSEKGMAGKCWVYSFLKRNPEISLRLPEPTSLNRILGFNKSEINIFFLTLRFLWLSTISQPIAYSMLMKLASVMYYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00418908;
- 90% Identity
- iTF_00056492;
- 80% Identity
- -