Aaes031869.1
Basic Information
- Insect
- Alsophila aescularia
- Gene Symbol
- -
- Assembly
- GCA_946251895.1
- Location
- CAMIUG010001898.1:127806-130298[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.059 5.8 8.5 0.4 3 22 16 35 14 35 0.95 2 22 0.00017 0.017 16.5 0.1 1 23 56 78 56 78 0.97 3 22 1.8 1.8e+02 3.8 1.6 5 23 86 105 83 105 0.94 4 22 0.051 5 8.7 1.0 1 23 192 214 192 214 0.95 5 22 0.17 16 7.1 0.2 1 23 219 241 219 241 0.98 6 22 7.9e-06 0.00077 20.7 0.8 1 23 247 269 247 269 0.98 7 22 0.00051 0.05 15.0 0.5 1 23 275 297 275 297 0.97 8 22 0.00016 0.015 16.6 0.9 1 23 303 325 303 325 0.98 9 22 1.1e-06 0.0001 23.5 1.2 1 23 331 353 331 353 0.97 10 22 0.00016 0.016 16.6 2.9 1 23 359 381 359 381 0.97 11 22 0.00013 0.012 16.9 0.8 2 23 387 409 386 409 0.96 12 22 0.00067 0.065 14.7 3.9 2 23 419 441 418 441 0.94 13 22 1.3 1.2e+02 4.4 0.8 2 23 450 471 449 471 0.81 14 22 0.00019 0.019 16.4 0.6 2 23 478 499 477 499 0.96 15 22 0.0029 0.28 12.7 2.3 1 22 507 528 507 530 0.91 16 22 0.00044 0.043 15.2 1.7 2 21 534 553 533 554 0.93 17 22 0.0091 0.88 11.1 3.7 2 23 558 579 558 579 0.94 18 22 0.044 4.3 9.0 3.2 1 23 588 611 588 611 0.97 19 22 0.045 4.4 8.9 3.3 2 20 619 637 618 637 0.94 20 22 0.041 4 9.0 0.5 2 21 646 665 645 666 0.94 21 22 1.2e-05 0.0011 20.2 0.4 2 23 674 695 673 695 0.96 22 22 0.00019 0.019 16.4 1.2 2 23 701 723 700 723 0.96
Sequence Information
- Coding Sequence
- ATGCAGAGTGCACACGTGAATTTGGAACGTGTCAATATATTTGGATGTGAGATCTGTACAAGGGGCTTTCTAGACCGGAATGATTTAAAAAATCATCAGAAAAAGTATTATGAATTTGAAATTAATACAAAATTAGAGGACAACAACAATCAATTAGAAAAGCCGTACAAATGTGACGAGTGCGGAGTGCGCTTTGTAAGGGAAACCACCCTCGTAGCGCACTCCGTCACCCACGAGCCCTTCCCGCACGTCTGCCAGTGCGGCGTCGGGTACTACCGGAAGTGCGACCTGGACTCCCACCGGAGGCTCGTCCATCCGATATTCAACCATCAAAACAAAATACCTAAAGTCAAACAAGAGTTCGCCGTCAACTCCAAACCTCGCTACAAAACGGATTCGGAAGCGGACGACGCTGAAGAGCCTGAACAGTCGGACGACGATAATTATAAACCAAAGAGCAAAGTAGGACCGAGACTGAAGGCTAAACTGACCTACAAACCCAAAGGAAAATCCAGAAATAAACGAACTCACAAGAACAAAGAAAACATGGTCGTAAAAGATGAATCGGGGCAGTACAAATGTCCGATATGTGCAAAAACGTATCTCAGCAGACACGGAATCAAGGAGCATATGACCGACCATACGGGGGAAAAGTACAAGTGTGACGAATGTCTGCAAGAGCTCCCGAGTATGGCTCGCTTGATCCAACACAAGCGCAGTCATGCCGGCGTTAAACACTTCGAATGCAGAGTTTGCAACAAACAGTTCGGCGCTAAAAAAAACTTGGAGATTCACATGAGGACTCACACGGGCGAAAAGCCTTACGCCTGTAACCTGTGCCCCATGAGGTTCACGCAGGGCGGCGCGCTCAAGCACCACGTGTTACGACACAAGGGGGAGAAGAACCACGAGTGTGAGCAGTGCGGGAAACGGTTCTTGTTGGCCGACAACCTGGTCCGGCACAGGCGCGTGCACACGGGGGAGAAGCCTTTCGAGTGCGAGACCTGCGGCAAGTGCTTCGCCGACCCCTCCGCGTTCCGGCGGCACAAGCTCATCCACACGGGGCTGAAGCCGCACAAGTGCGAAGTGTGCGCCAAAGCCTTCTGCGACTACAGCGCGCTCTTCAGGCACAGACTTATCCACCAAGGTTACTCCGTCAAATGCACGGTCTGCGACAGAACATTCAAGGCTCGCGACCAAATGCTCCGCCACATCAAACTGACGCACAAACCGATAAAAGAAGAAGAGAAGTGCGAATGCGATCACTGCGGAAAGAAGTTTATGTTCAAACAGTATCTGGTGATACATATGCAGCTCATGCATTTGAAGATTCAAGTGCCGAAGGTCAAGTGTGACATCTGTGGCAAGATGGAAACCTCGAGAACTATCAATAGGCACATCCAACACGTGCACCTCGGAGCTTTAACGTGTGAGTGTGAGGTGTGCGGACAGGTTATACCTAGTAAATATCGCTTGAAGAGCCATATGAGAGTTCACGATAAAGTCAAAGAGAATATTTATGAATGTGACCACTGCCACGCGAGTTACTCCTACAAGAGTGCCGTAGCGAAGCACATAGTATTTAAACATTTAGGTATAAAGTGCGATTTGTGCAAAAAATCCTTCCCTACGAGTCACAAGCTGAGACTTCACAGATCGACAGGTTGCGAGAAGTGCCCCGTGTGCCACATGGCCTTCCGCACTAAAACTTTAATGGAACACCATTTCGTGCGGCACGTGCCTCGAAACCAACGGCAGGTGTTCGAATGTGATTACTGTTGTAAACAATTTCCACTTAAAAGTAGACTATTGAAGCACATTAAATACGTCCATGAGTTAGTGAAAGCTGTACTTTCTTGCGACCACTGCAAAGAGACATTCTGTAATAGGAATAAGATGAGAGACCATATTTGGGACAAGCACATGATTAGCTTGTATTGCGACGTTTGCTTGAAGAGGTTCTACAACGAGCGTGAGTTCAAGCTGCACAAGCGTGCGCGCTGCGAGCTCTCGAGGCTGCCGTGCGACATCTGCGAGCTGACATTCAGGAAGCCCTCTCACCTGCAGGTGCATCTTTTAAGTCACGGCCCGAAAAGGTTACAGTGCGACTTGTGCGGCGTCAGGTATAAAACGAAACCTTGTATGATTAGACACATGAGGTCGGCTCACGGGTTTAAGTAA
- Protein Sequence
- MQSAHVNLERVNIFGCEICTRGFLDRNDLKNHQKKYYEFEINTKLEDNNNQLEKPYKCDECGVRFVRETTLVAHSVTHEPFPHVCQCGVGYYRKCDLDSHRRLVHPIFNHQNKIPKVKQEFAVNSKPRYKTDSEADDAEEPEQSDDDNYKPKSKVGPRLKAKLTYKPKGKSRNKRTHKNKENMVVKDESGQYKCPICAKTYLSRHGIKEHMTDHTGEKYKCDECLQELPSMARLIQHKRSHAGVKHFECRVCNKQFGAKKNLEIHMRTHTGEKPYACNLCPMRFTQGGALKHHVLRHKGEKNHECEQCGKRFLLADNLVRHRRVHTGEKPFECETCGKCFADPSAFRRHKLIHTGLKPHKCEVCAKAFCDYSALFRHRLIHQGYSVKCTVCDRTFKARDQMLRHIKLTHKPIKEEEKCECDHCGKKFMFKQYLVIHMQLMHLKIQVPKVKCDICGKMETSRTINRHIQHVHLGALTCECEVCGQVIPSKYRLKSHMRVHDKVKENIYECDHCHASYSYKSAVAKHIVFKHLGIKCDLCKKSFPTSHKLRLHRSTGCEKCPVCHMAFRTKTLMEHHFVRHVPRNQRQVFECDYCCKQFPLKSRLLKHIKYVHELVKAVLSCDHCKETFCNRNKMRDHIWDKHMISLYCDVCLKRFYNEREFKLHKRARCELSRLPCDICELTFRKPSHLQVHLLSHGPKRLQCDLCGVRYKTKPCMIRHMRSAHGFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -