Aaes027037.1
Basic Information
- Insect
- Alsophila aescularia
- Gene Symbol
- -
- Assembly
- GCA_946251895.1
- Location
- CAMIUG010001368.1:589482-627402[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 7.1 6.9e+02 2.0 0.2 2 16 56 70 55 72 0.84 2 19 4e-05 0.0039 18.5 2.5 1 20 224 243 224 246 0.94 3 19 0.00015 0.015 16.7 1.0 1 23 252 274 252 274 0.98 4 19 6.7e-07 6.5e-05 24.1 1.6 1 23 280 302 280 302 0.98 5 19 1.3e-05 0.0013 20.0 1.9 1 23 308 330 308 330 0.98 6 19 1.3e-05 0.0013 20.1 0.1 1 23 336 358 336 358 0.95 7 19 6e-07 5.8e-05 24.3 1.3 1 23 364 386 364 386 0.98 8 19 3e-05 0.0029 18.9 2.5 1 23 392 414 392 414 0.98 9 19 0.0015 0.15 13.5 0.3 5 20 423 438 422 440 0.92 10 19 0.016 1.6 10.3 0.2 5 20 450 465 449 467 0.92 11 19 0.016 1.6 10.3 0.2 5 20 477 492 476 494 0.92 12 19 0.72 70 5.1 1.0 5 20 504 519 503 521 0.91 13 19 0.002 0.19 13.2 0.3 5 20 533 548 532 550 0.92 14 19 0.016 1.6 10.3 0.2 5 20 560 575 559 577 0.92 15 19 0.011 1.1 10.9 0.2 5 21 587 603 586 604 0.91 16 19 0.011 1.1 10.9 0.2 5 21 614 630 613 631 0.91 17 19 0.011 1 10.9 1.8 5 21 641 657 640 658 0.91 18 19 0.016 1.6 10.3 0.2 5 20 668 683 667 685 0.92 19 19 3.5e-05 0.0034 18.7 5.5 1 23 707 730 707 730 0.97
Sequence Information
- Coding Sequence
- ATGGCGATGGACTTAGAGCGAATATGTCGTCTGTGTTTGGAATCAAACAAACAAACATTCGATATTTTCACCAGTTTCTATTTGAAAAGAAACATTTCATACACAGAAATGCTTTCTACTTGTTCTAAACTTCAGCCAAGCAGCAAAGATGGTCTACCAAAGCTCATCTGCAAAGTATGTACAAAGCAGCTAAAGCGGACCTATGCTTTCAAACTGAAATGTGAAGAAAGTGATAAAAAACTACGGCAGTATCTAGAGAATATTTCATTAATGCAAAATGTTGACATGATTGGAGATTTAGATATAAAAAACGAACAGTATTTAAAGGAGGATTTTGAATTAGACTTGAATGAGAGTGAACAGAAAGTTCTAGAGATGCTGGACCAGAATGTTGAAGCTGATTATAAAGATAATATTAAAATGGAACTGAACTACAGTGACGATGCAAATGACACCTGCTGGGAGGCCGATGACAATATTTTGCTTCAAAACATTAAAGTTACCAAGATACATGATGTACTAGAAAATGCGGAGAAACCAAAAAAGAAAAGAGGACGGAAGAAAAGAGACACCTGCTTGCTCGCTTTATTTTATTCAAAAGAACTTAGCCATTGGTTGACAGTGTTTCTGGAAGGCGAGCAACCTCCCGTCCCGATAAGCAAGACTCCGCACCAGTGCGATGTCTGCGGCAAAGTGCTGAGCACCAAGAGCAACCTGAAGGCTCACAAGATATGCCACACCGATGTTAGGCCTTACAAGTGCGCTGACTGTCCTGCTTCATTTAGAGGTCACAGCGCCCTGTTCCAACACAAGAAGGTGCACTCTGGGGAGACTCCGTACCACTGCGAGTACTGTCCCAAGCAGTTCAGCCGCCGGTCGGGGCTCGTCAATCACATACGCATACACACAGCCGAGAAGCTGTACTGCTGCGAGATCTGCTTGAAGACGTTCGTGCAGAGCGCGCAGCTCTCCATACACATGAAGCGGCACAAGGGGGACAAGCCGTTCCTCTGTCAGGACTGCGGGAAAGGGTTCCCGATAAAAGCAGACCTGAAAGTGCACCAGCGGATCCACAGCGGGGAGAAGCCGTACTCCTGCCACCTGTGCACCAAGACATTCGCCACTTCCGGCAACCTGTCCATACACATACGGATACACAAAAAAGAGATTAGGTATAACTGCAAAGAGTGCCACCGCGGGTTCGTCACGAACAGTGCTTACAATGTGCACCTGAAGAGGCACAAGGGGCAGCGCGACTACCTCTGCGATTGCGGCAAGACATTCTACACGTCTTCCGCACTCAAGCAGCACAAGGTAACAACAATCAACTTGAGCGACTACCTCTGCGAGTGCGGCAAGACATTCTACATGTCATCGGCGCTCAAGCAGCACAAGGTAACAACAATCAACTTGAGCGACTACCTCTGCGAGTGCGGCAAGACATTCTACATGTCATCGGCGCTCAAGCAGCACAAGGTAACAACAATCAACTTGAGCGACTACCTCTGCGAGTGCGGCAATACATTCTACATGTCGTCGGCGCTCAAGCAGCACAAGCACAAGGTAACAACAATCAACTCGAGCGACTACCTCTGCGAGTGCGGCAAGACATTCTACACGTCGTCCGCGCTCAAGCAGCACAAGGTAACAACAATCAACTCGAGCGACTACCTCTGCGAGTGCGGCAAGACATTCTACATGTCGTCGGCGCTCAAGCAGCACAAGGTGACAACAATCAACTTGAGCGACTACCTCTGCGAGTGCGGCAAGACATTCTACATGTCGTCGGCGCTCAAGCAGCACAAGATAACAACTATCAACTTGAGAGACTACCTCTGCGAGTGCGGCAAGACATTCTACATGTCGTCGGCGCTCAAGCAGCACAAGATAACAACAATCAACTTGAGCGACTACCTCTGCGAGTGCGGCAAGACATTTTGCATGTCGTCGGCGCTCAAGCACCACAAGATAACAACAATCAACTTGAGCGACTACTTCTGCGAGTGTGGCAAGACATTCTACATGTCGTCGGCGCTCAAGCAGCACAAGATACTGCAAGACTGCAGACTTTCTACATCAGGGAAACAGCATAAAGTCGTCCACACCGGCGAGAAGAAATACCAGTGCAAGATATGCGAGAGGAAGTTCACGCAGACCAGCCACCTGAGCCGACACTTCAAGAGGGACCACTCGAAGCCCAACGCGCCCTTGCCGGCGTCCGAGCAGTACAAGATCGTGGTGCAAGACACGCAAGACGGCAGGATGTTCAGGCTGATAGACAGCGCGATTCAGAAACTCGATATGGATCCGGGGGTGAAGTGTGAAGGGACGTAA
- Protein Sequence
- MAMDLERICRLCLESNKQTFDIFTSFYLKRNISYTEMLSTCSKLQPSSKDGLPKLICKVCTKQLKRTYAFKLKCEESDKKLRQYLENISLMQNVDMIGDLDIKNEQYLKEDFELDLNESEQKVLEMLDQNVEADYKDNIKMELNYSDDANDTCWEADDNILLQNIKVTKIHDVLENAEKPKKKRGRKKRDTCLLALFYSKELSHWLTVFLEGEQPPVPISKTPHQCDVCGKVLSTKSNLKAHKICHTDVRPYKCADCPASFRGHSALFQHKKVHSGETPYHCEYCPKQFSRRSGLVNHIRIHTAEKLYCCEICLKTFVQSAQLSIHMKRHKGDKPFLCQDCGKGFPIKADLKVHQRIHSGEKPYSCHLCTKTFATSGNLSIHIRIHKKEIRYNCKECHRGFVTNSAYNVHLKRHKGQRDYLCDCGKTFYTSSALKQHKVTTINLSDYLCECGKTFYMSSALKQHKVTTINLSDYLCECGKTFYMSSALKQHKVTTINLSDYLCECGNTFYMSSALKQHKHKVTTINSSDYLCECGKTFYTSSALKQHKVTTINSSDYLCECGKTFYMSSALKQHKVTTINLSDYLCECGKTFYMSSALKQHKITTINLRDYLCECGKTFYMSSALKQHKITTINLSDYLCECGKTFCMSSALKHHKITTINLSDYFCECGKTFYMSSALKQHKILQDCRLSTSGKQHKVVHTGEKKYQCKICERKFTQTSHLSRHFKRDHSKPNAPLPASEQYKIVVQDTQDGRMFRLIDSAIQKLDMDPGVKCEGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -