Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0091 1.3 10.1 0.2 11 26 6 21 3 29 0.86

2 8 0.089 13 6.9 3.7 6 38 45 71 43 77 0.75

3 8 0.0077 1.1 10.3 0.4 11 26 91 106 83 114 0.85

4 8 0.0063 0.9 10.6 0.2 11 27 134 150 124 158 0.86

5 8 0.0066 0.93 10.5 0.3 11 26 177 192 167 200 0.86

6 8 0.0063 0.9 10.6 0.2 11 27 220 236 210 244 0.86

7 8 0.0063 0.9 10.6 0.2 11 27 263 279 253 287 0.86

8 8 0.0071 1 10.4 0.3 11 26 306 321 296 327 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0091	1.3	10.1	0.2	11	26	6	21	3	29	0.86
2	8	0.089	13	6.9	3.7	6	38	45	71	43	77	0.75
3	8	0.0077	1.1	10.3	0.4	11	26	91	106	83	114	0.85
4	8	0.0063	0.9	10.6	0.2	11	27	134	150	124	158	0.86
5	8	0.0066	0.93	10.5	0.3	11	26	177	192	167	200	0.86
6	8	0.0063	0.9	10.6	0.2	11	27	220	236	210	244	0.86
7	8	0.0063	0.9	10.6	0.2	11	27	263	279	253	287	0.86
8	8	0.0071	1	10.4	0.3	11	26	306	321	296	327	0.85

Coding Sequence: ATGCTCTTACGATTTCAGAGGAAAGAAAAGAAGGTGGAGTGCGACGTGTGCCACAAAACTATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACATTAAGTTTTGTAAGAAGCAGAAGGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCGGCACCAGAAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGAAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGAAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGAAGATCAAACATGCCGGCAAGGGGCCCGTATGCGAGGTAACACACTTACAATTTCAGAGGAAGGAGCAGAAGGTGGAGTGCGACGTGTGCCACAAAACGATGCAACAGGCGAGTCTGCGGCTGCACCAGGAGATCAAA
Protein Sequence: MLLRFQRKEKKVECDVCHKTMQQASLRLHQEIKHAGKGPVCEVTHIKFCKKQKVECDVCHKTMQQASLRRHQKIKHAGKGPVCEVTHLQFQRKEQKVECDVCHKTMQQASLRLHQEIKHAGKGPVCEVTHLQFQRKEQKVECDVCHKTMQQASLRLHQKIKHAGKGPVCEVTHLQFQRKEQKVECDVCHKTMQQASLRLHQEIKHAGKGPVCEVTHLQFQRKEQKVECDVCHKTMQQASLRLHQKIKHAGKGPVCEVTHLQFQRKEQKVECDVCHKTMQQASLRLHQKIKHAGKGPVCEVTHLQFQRKEQKVECDVCHKTMQQASLRLHQEIK

Sequence clustering based on sequence similarity using MMseqs2