Basic Information

Insect: Alsophila aescularia
Gene Symbol: -
Assembly: GCA_946251895.1
Location: CAMIUG010001535.1:373476-411688[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 9.9e-11 7e-08 33.0 0.0 1 43 17 58 17 60 0.92

2 6 1.2e-07 8.2e-05 23.2 0.0 3 38 66 100 64 105 0.93

3 6 0.00091 0.64 10.7 0.4 1 42 108 148 108 151 0.84

4 6 9.9e-06 0.007 17.0 0.0 2 30 157 184 156 199 0.85

5 6 3.4e-06 0.0024 18.5 0.0 2 34 205 236 204 246 0.84

6 6 5.4e-07 0.00038 21.1 0.0 2 34 253 284 252 287 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	9.9e-11	7e-08	33.0	0.0	1	43	17	58	17	60	0.92
2	6	1.2e-07	8.2e-05	23.2	0.0	3	38	66	100	64	105	0.93
3	6	0.00091	0.64	10.7	0.4	1	42	108	148	108	151	0.84
4	6	9.9e-06	0.007	17.0	0.0	2	30	157	184	156	199	0.85
5	6	3.4e-06	0.0024	18.5	0.0	2	34	205	236	204	246	0.84
6	6	5.4e-07	0.00038	21.1	0.0	2	34	253	284	252	287	0.93

Sequence Information

Coding Sequence: ATGCCATGTGTTATTCCAAGGGTGGAAACTTCAGTGCGGAAGACATGGGATCCGGAAGACTTGGAGAAGGCATTGAACGCCATACGCAATGGGAGCACAGTTTCAGAAGCTGCCAGGAACTTCAACATCCCAGGGCCTACCTTAAGAGGCCGAATGAGGGTGGGAACTTCAGTGCGGAAGACATTCTGGAATCAGGATGACTTGAAGAAGGCATTGAAAGCCATACGCAATGGGAGCACAATTTCAGCAGCTAGCAAGAACTTCAAAATCCCAGATTCTACCATAAGACGCCGAATGAGGATGGAAAATATTGTGGAGAAAAAACCGGATTACATGAAGATGGCATTGAGAGCCGTACGCAGAGGGAGCTCAATTGCTGCAGCTGCCAGGACATTCAAAATCACAGCGTATGCCTTAACAAAACAAGTGAGGATGAAAAATGAAGCGCAGAAAAAGAGGATGTGGGATCCGCATGACATGAAAAAGGCTTTGAAAGCCATACGCAATGGGAGCTCAATGCGAGCAGCTAGCAGCAGTTTCAACATCCCAATATATGCCTTAAAAAAACAAATGAGGATGCAAAATGAAGCGCAGAAAAAGAGGATGTGGGATCCGCATGACATGAACAAGGCTTTGAAAGCCATACGCAATGGGAGCTCAATGCGAGCAGCTAGCAGCAGTTTCAACATCCCAGTGTATGCCTTAAAAAAACAAATGAGGGTGAAAAATGTAGTGCAGGAAAAGACTATGTGGGATCCGAATGACCTGAAGAAGGCTTTGAAAGCCATTCGCAAAGGGAGCACAATTGCAGCAGCTAGCAGAAGTTTCAACATCCCAGAGTCTACCTTAAAAACACAAATGAGTGCGCCTGATACGGAGCATACTTCAAGCCCAAAAGTTACAAAAGAAGATAAGCTACTGGAAAGATTGATGGAATTTGAAGAAAATGAAAGAAACAGTCCCATCGAAGCAACTCATAACCACGATGACGATGAAGATGTCATTATGATCGATAACGATGGGAACGAGGAAAATGACAACGCGAACATTAGAAACAGAGATCAAGATAAAACAGAAGTCGAATCAAACATGCCAATCATAGAAGCAGTGGACGGCCAAATTATAATTGAATTGATACAAGATCCAACTCAAGCCGGTGAAGGGGCTTGGATACCTTGTGATTGGGACGCTGACCTGGCGCATATACCCGCTATGCAAATCATAGTGCCCACAGTGGAAGCGCCACAAGAACCTTCACAGCCATCAATGTCACTAGAATTTCCAATGCTAGCAAGTGTACTACAATCTCCAAAGCCACCAAAGTCACTTCAATCTCCAAAACCATCAAAGTCACCTCTATCTCCAAAGCCATCAAAGTCACTTCAATCTCCAAAGCCATCTAAGTCACTTCAACCTCCAAAGCAATCAAAGTCACTTAAATCTCCAAAGCCGTCCAAGTCACTTCAATATATAATGCCATCCAAGTTACTGCAATCTCCAAAGCCATCGAGATCACTACAATCTCCAAAGCCATCAAAGCCGCCAGAATTTGCAGAGCCACCAAATTCTTCAGAATTTGTAGAGCCACGAAATTCTCCAGAATTTGTAGAGCTTCCAAAGTCGCCAGAACTTGCAAAACCAGCATCACCAGAATGTGTAGAGTTGGAAATATTAAATTCACCGCCGGTATCACCGTTGCCTCCCGAAGAGCCTCAATCCTATGGCCCTACCAGTTTAGGAACTTTTGCACCAGTGAATGAACTTCGCGATGTTGTTCAGCATAAAGGGAGCTACCCTAAACAAGATCGAAAACTTTAA
Protein Sequence: MPCVIPRVETSVRKTWDPEDLEKALNAIRNGSTVSEAARNFNIPGPTLRGRMRVGTSVRKTFWNQDDLKKALKAIRNGSTISAASKNFKIPDSTIRRRMRMENIVEKKPDYMKMALRAVRRGSSIAAAARTFKITAYALTKQVRMKNEAQKKRMWDPHDMKKALKAIRNGSSMRAASSSFNIPIYALKKQMRMQNEAQKKRMWDPHDMNKALKAIRNGSSMRAASSSFNIPVYALKKQMRVKNVVQEKTMWDPNDLKKALKAIRKGSTIAAASRSFNIPESTLKTQMSAPDTEHTSSPKVTKEDKLLERLMEFEENERNSPIEATHNHDDDEDVIMIDNDGNEENDNANIRNRDQDKTEVESNMPIIEAVDGQIIIELIQDPTQAGEGAWIPCDWDADLAHIPAMQIIVPTVEAPQEPSQPSMSLEFPMLASVLQSPKPPKSLQSPKPSKSPLSPKPSKSLQSPKPSKSLQPPKQSKSLKSPKPSKSLQYIMPSKLLQSPKPSRSLQSPKPSKPPEFAEPPNSSEFVEPRNSPEFVELPKSPELAKPASPECVELEILNSPPVSPLPPEEPQSYGPTSLGTFAPVNELRDVVQHKGSYPKQDRKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -