Amod021000.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- -
- Assembly
- GCA_963675035.1
- Location
- OY776111.1:265206420-265211437[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00077 0.027 17.5 0.0 3 23 7 28 6 28 0.93 2 7 3.7e-05 0.0013 21.7 2.9 1 23 33 56 33 56 0.97 3 7 0.21 7.3 9.9 0.1 2 23 68 90 67 90 0.92 4 7 0.0034 0.12 15.5 0.2 2 23 115 137 115 137 0.94 5 7 0.0052 0.18 14.9 0.0 2 23 142 164 141 164 0.94 6 7 0.3 10 9.4 0.3 1 19 169 187 169 189 0.90 7 7 9 3.1e+02 4.7 0.4 3 13 724 734 722 735 0.88
Sequence Information
- Coding Sequence
- atggctgttcctcgtatgtgtgaggtctgtggtcgcgtcttcgcgaacgctggaaacctggctcgtcacgctgcatccgcccacaacgaccgccattacgactgccatgtctgcggtagacacttcgggcgaagtgacaacctgcaacgccacctcaccacagttcatcctcctactcctcacgaccaagcgccaggctgtccgtgtccattgtgctccgttgccctggcgagtcctgaggatctgcgccatcacatggaagcggtccacggtgcgagctcgtcagcttcgacctcctcctcttcctccgctgcaacgccacccgtcagagacccacggcccgagtgcaacgcgtgcgggcggcgattcgcccgcgaggatctgctccggcgtcacgtgcagctggtgcacgccaacgaggtccgctgtcccgattgcggcgcccttttccgcagggccgcttatctccagcagcacgtggcgagcgcccaccgcggcatgaggttcgcgtgtgcctactgcgaccgaggcttcacccggcgctacaaccgagaccagcacgaggcccacaactgccctgtcgtgaggaacctcgttgtggacgagatgccgcacctgcccgtcctgtcacccgagccccgacccggccgcgagccccagcccggacccagccgcgagccccagcccggacccagccacgagccccagcccggacccagccacgagccccagcccggacccagccacgagccccagcccggacccagccgcgagccccagcccggacccagcacggcacctgacgggatggtgggtgggggactgcccgcgttccgccccatccaacgggcgttccgcggacgcctcctgaccttcggcctgtcccggcccatggaggacttcttgaccgtggaggacgcgctggtgctactgttcgacagcgtcctggaactgctggccgacgtcaggacccgacacccgaacatcaaggttaacatgttcctggagtgtgaattcgccaacgttcacggggccacctgtctacgggccttcaagacgaagaacgtgcctctcaccgccgcgtccaacttggaggacttcctgtcggcatccttccacaagctggaggaagagaaggagcagtgtctgctagtgggcagcgggtggagctatctccggatacgcgacctggagatccgcgtcaacctctacacaccgttgggagaacgcggagctcggttcattcagcttcccaggaccatctgcgacacgcgcgccgttatcaacgtacaaaacgtcgatgacatgtgcttcgcatatgccgtcctggccaagttcgtcgcgcaacacccagAGAGGCCCGCATCATACACACCGGatgtcatggcacgctacgactgggtcggcctacgcttccccgtggctgtgaaggacatcaaagtctttgagaggaggaaccccatcagcgttaaCGTAtatgggatcgagcgcgccatggtggggagacgccctgacggatcgccaaagttccaggaccgcgtgttccctttgaagatctgcaagcgggagttggaggatcaccgggacctgctgtacgtgaccactggcgggaacagtcactacgcctacatcacgaacgtcagcaggctggtgcgatccaagctgacgtctcacggtcacaccatccacgtgtgtaagcgatgtttcgcttacttcgacaaccggcctcacaagctgcaactgtctggtgccgagcgtctggaggagcacatgcgatactgcaccgccaaggctccccttcgcctggacttgtcgaagaagcagcagatccgcttcacccaccctgagtacactaggcgggagaggttctgcatctacgcggactttgagtgtgctctgcagcccgtcgctgttgacccggtggaagcgccgcccggcacgaggcccctgcaactgcacgtcccatacgccttcgcctaccagatcgtggactcgctcggcctggaggagtttgagccccgcgtctacttcggggctgacgcgtccaaggtcttcatggagaggctcaagatggacgtgctggcgctgtgggagttcctgttcagcatgagagctctgtacccttctctgacccggcaggagatggacgagtacctggtggcgactcactgctacctctgcgggaaggagttcacggaccaggacgtcaaggtgcgggaccacaaccacaccccgccttacgagttccgaggagccgctcatcgctcgtgcaacctcaggtaccgggagcagcgacacatcaactgctacttccacaacctgtccaactacgacgcccacttcgtagtgcgggagctggccatcgaccccggtgatgtggacgtgctggcgcacaccgaagagcgctacatcgccttcaccaagcggtttcactttggtcagcccggggacaaccaacgacagagcagtttcgcggtgcggttcctcgacacctacaggttcttgtccatgagcctggccaacctggcggcgggacttcccacggacaggatgcgcgagacgaggaagcgcttccccgacgaccggctgttcgacctggtgcgcaggaagggcgtgttcccctacgactttgtcacgtcgtacgacacgttgtactctaccagggagctgcctcccaaggaggcgttcaggaactccatgaccctggaggatatcaaggaggaggagtacgagcacgccctcaacgtgtggcgagcctttgagtgtcacaacctcaaggactatgccgacaagtacctgcggtgcgacatcgccctgctcaccgatgtctttgagcagttccgcgacacctctttggctgagtatggactggaccctgcccactactacaccctgccctcttacgcctgggacgtcatgctcaagacctgcggcgtggagctggacacgctgcaggacttcgacatgtacctgttcgtggagcaggggatccggggagggatctcacaggccatcacctgctacgccaaggccaaccacgacagatGCCCAGaccaccgcccggacgagcccacgcgcttcctcctgtacctggacgccaacaacctctacggctgggccatgtcccagtgcctgccgaccggagagttccagtggctcagccgtgaggaaatccaggcgttggacattgcagcgctggacgcggaggccgatcgaggatacatcttggaagtggacctccactaccccgcgcgcctacacgacctgcacaaggaccttccctactgctgcgagacgaagcgtccgccaacagggaagttccccaaactgttgacgaccctggacgacaagacacactacatctgtcactacagggtcttacagcaggcgctgcaaaacggattggagctggtcgcggtgcatcgggcgatctcgtttcaccagtcgcggtggttggaaccgtacatcctgatgaacacggagctgcggaagaaggccaaaacgaagtttgaacaggacttcttcaagctcatgaacaacgcggtctttggcaagaccatcgagaatgtacggaagcgcctcaacgtgaagctggtgtgcaccccggagaagttttccaagtacgtcgtcagatccaacttcctggaccggacgtactacacggaggacgtggccctggtgcatctgtccaaggtcaacattgtgttagacaagcccgtctacgtaggcatgtcagtcctggagctgagcaagtggctcatgtacgagttcctgcgcaagatgaaggagcgctacggtgaccgcctcaccgtggactacatggacacggacagcttcgtctttgacatcgtgtcccaggacgtctatgctgagatgaaggaacacctggacgactttgacaccagcggctatccgaggtctcacccctgctacagccccgtcaacgccaaggtcatcggaaagtttaaggacgagtgcaacggcctgtccttatacgagtacctcggcctgcggtccaagctgtacttcatggacatcgagtacgcggcgacaggcggcagcaaggctctcaagcgagccaagggggttgcgaagggcgttgtcaagaacgtcctcacccccgacgactacagagagtgtctgttttacggggtccagaaacacaccaccaacgtccggttccagtcccactttcaccgggtctacaccgtggaagtgaacaagctgagcctcagtccagctgacgacaagcggtgcgtcctccccgacggtatccacactctgccatggggacacaaggacgtcccgccgctaccgccagccaggaggagaggagaacatccgcagcggatggaagtggacggtgaggaggaggagggacagcgccaggacgaagacgaggaagaagaggaattccccgtctag
- Protein Sequence
- MAVPRMCEVCGRVFANAGNLARHAASAHNDRHYDCHVCGRHFGRSDNLQRHLTTVHPPTPHDQAPGCPCPLCSVALASPEDLRHHMEAVHGASSSASTSSSSSAATPPVRDPRPECNACGRRFAREDLLRRHVQLVHANEVRCPDCGALFRRAAYLQQHVASAHRGMRFACAYCDRGFTRRYNRDQHEAHNCPVVRNLVVDEMPHLPVLSPEPRPGREPQPGPSREPQPGPSHEPQPGPSHEPQPGPSHEPQPGPSREPQPGPSTAPDGMVGGGLPAFRPIQRAFRGRLLTFGLSRPMEDFLTVEDALVLLFDSVLELLADVRTRHPNIKVNMFLECEFANVHGATCLRAFKTKNVPLTAASNLEDFLSASFHKLEEEKEQCLLVGSGWSYLRIRDLEIRVNLYTPLGERGARFIQLPRTICDTRAVINVQNVDDMCFAYAVLAKFVAQHPERPASYTPDVMARYDWVGLRFPVAVKDIKVFERRNPISVNVYGIERAMVGRRPDGSPKFQDRVFPLKICKRELEDHRDLLYVTTGGNSHYAYITNVSRLVRSKLTSHGHTIHVCKRCFAYFDNRPHKLQLSGAERLEEHMRYCTAKAPLRLDLSKKQQIRFTHPEYTRRERFCIYADFECALQPVAVDPVEAPPGTRPLQLHVPYAFAYQIVDSLGLEEFEPRVYFGADASKVFMERLKMDVLALWEFLFSMRALYPSLTRQEMDEYLVATHCYLCGKEFTDQDVKVRDHNHTPPYEFRGAAHRSCNLRYREQRHINCYFHNLSNYDAHFVVRELAIDPGDVDVLAHTEERYIAFTKRFHFGQPGDNQRQSSFAVRFLDTYRFLSMSLANLAAGLPTDRMRETRKRFPDDRLFDLVRRKGVFPYDFVTSYDTLYSTRELPPKEAFRNSMTLEDIKEEEYEHALNVWRAFECHNLKDYADKYLRCDIALLTDVFEQFRDTSLAEYGLDPAHYYTLPSYAWDVMLKTCGVELDTLQDFDMYLFVEQGIRGGISQAITCYAKANHDRCPDHRPDEPTRFLLYLDANNLYGWAMSQCLPTGEFQWLSREEIQALDIAALDAEADRGYILEVDLHYPARLHDLHKDLPYCCETKRPPTGKFPKLLTTLDDKTHYICHYRVLQQALQNGLELVAVHRAISFHQSRWLEPYILMNTELRKKAKTKFEQDFFKLMNNAVFGKTIENVRKRLNVKLVCTPEKFSKYVVRSNFLDRTYYTEDVALVHLSKVNIVLDKPVYVGMSVLELSKWLMYEFLRKMKERYGDRLTVDYMDTDSFVFDIVSQDVYAEMKEHLDDFDTSGYPRSHPCYSPVNAKVIGKFKDECNGLSLYEYLGLRSKLYFMDIEYAATGGSKALKRAKGVAKGVVKNVLTPDDYRECLFYGVQKHTTNVRFQSHFHRVYTVEVNKLSLSPADDKRCVLPDGIHTLPWGHKDVPPLPPARRRGEHPQRMEVDGEEEEGQRQDEDEEEEEFPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00054301;
- 90% Identity
- iTF_00054537; iTF_00052289; iTF_00052321; iTF_00054150; iTF_00054439; iTF_00052364; iTF_00052270; iTF_00052241; iTF_00052690; iTF_00054807; iTF_00052920; iTF_00054139; iTF_00052449; iTF_00054465; iTF_00054657; iTF_00052418; iTF_00052962; iTF_00054050; iTF_00053155; iTF_00054339; iTF_00054787; iTF_00052420; iTF_00052612; iTF_00052325; iTF_00054437; iTF_00052506; iTF_00052294; iTF_00052774; iTF_00053702; iTF_00054278; iTF_00053895; iTF_00052552; iTF_00052425; iTF_00054441; iTF_00052266; iTF_00054282; iTF_00052395; iTF_00052652; iTF_00053964; iTF_00054061; iTF_00054701; iTF_00052334; iTF_00052463; iTF_00053817; iTF_00054063; iTF_00052849; iTF_00054641; iTF_00054258; iTF_00054354; iTF_00054259; iTF_00054260; iTF_00054548; iTF_00052309; iTF_00054667; iTF_00052917; iTF_00054773; iTF_00052246; iTF_00054358; iTF_00052345; iTF_00052505; iTF_00052378; iTF_00052634; iTF_00052794; iTF_00054682; iTF_00052508; iTF_00052860; iTF_00054044; iTF_00054556; iTF_00052285; iTF_00053021; iTF_00053085; iTF_00054684; iTF_00054429; iTF_00054525; iTF_00052254; iTF_00052478; iTF_00052542; iTF_00053886; iTF_00054078; iTF_00052543; iTF_00052480; iTF_00052672; iTF_00054464; iTF_00052385; iTF_00052961; iTF_00052355; iTF_00052515; iTF_00052547; iTF_00052963; iTF_00053305; iTF_00054151; iTF_00052356; iTF_00052452; iTF_00052836; iTF_00052645; iTF_00052965; iTF_00053157; iTF_00052391; iTF_00054279; iTF_00052513; iTF_00052545; iTF_00052577; iTF_00052673; iTF_00054571; iTF_00052769; iTF_00054145; iTF_00054625; iTF_00052720; iTF_00054753; iTF_00053090; iTF_00053762; iTF_00054594; iTF_00054626; iTF_00054754; iTF_00054850; iTF_00052579; iTF_00053891; iTF_00054563; iTF_00054659; iTF_00054723; iTF_00052484; iTF_00052804; iTF_00054308; iTF_00054404; iTF_00054916; iTF_00052357; iTF_00052549; iTF_00054597; iTF_00054789; iTF_00052422; iTF_00052550; iTF_00053190; iTF_00053958; iTF_00054086; iTF_00054438; iTF_00054790; iTF_00052263; iTF_00052487; iTF_00052839; iTF_00053063; iTF_00053959; iTF_00054791; iTF_00052296; iTF_00054632; iTF_00052489; iTF_00053641; iTF_00054665; iTF_00054793; iTF_00052298; iTF_00052650; iTF_00053034; iTF_00053066; iTF_00053834; iTF_00054154; iTF_00054442; iTF_00052235; iTF_00052427; iTF_00052875; iTF_00052907; iTF_00053003; iTF_00053611; iTF_00053771; iTF_00054603; iTF_00054635; iTF_00052204; iTF_00052428; iTF_00052492; iTF_00052748; iTF_00053004; iTF_00053100; iTF_00054156; iTF_00054540; iTF_00054572; iTF_00054732; iTF_00053005; iTF_00053901; iTF_00054189; iTF_00054765; iTF_00052494; iTF_00052622; iTF_00053998; iTF_00052335; iTF_00052751; iTF_00053039; iTF_00053071; iTF_00053807; iTF_00054031; iTF_00054191; iTF_00054543; iTF_00054799; iTF_00053040; iTF_00054032; iTF_00054224; iTF_00054480; iTF_00054450; iTF_00054451; iTF_00054452; iTF_00054453; iTF_00054454; iTF_00054135; iTF_00054455; iTF_00054456; iTF_00054457; iTF_00054976; iTF_00054640; iTF_00054672; iTF_00052337; iTF_00052593; iTF_00052657; iTF_00053009; iTF_00053073; iTF_00053809; iTF_00054001; iTF_00054545; iTF_00054705; iTF_00052370; iTF_00052402; iTF_00052594; iTF_00054034; iTF_00054290; iTF_00054642; iTF_00052371; iTF_00053043; iTF_00054867; iTF_00052468; iTF_00052660; iTF_00054036; iTF_00054068; iTF_00054196; iTF_00054516; iTF_00054708; iTF_00054740; iTF_00054997; iTF_00052757; iTF_00053045; iTF_00053077; iTF_00054517; iTF_00054645; iTF_00054741; iTF_00052694; iTF_00052758; iTF_00052886; iTF_00053046; iTF_00054038; iTF_00054486; iTF_00052631; iTF_00052695; iTF_00053047; iTF_00053111; iTF_00053527; iTF_00053719; iTF_00054071; iTF_00052440; iTF_00052536; iTF_00054232; iTF_00054712; iTF_00052697; iTF_00054949; iTF_00054958; iTF_00054809; iTF_00052538; iTF_00052858; iTF_00053178; iTF_00053530; iTF_00054618; iTF_00052539; iTF_00053051; iTF_00053947; iTF_00054747; iTF_00054779; iTF_00052540; iTF_00052604; iTF_00052828; iTF_00053911; iTF_00052825; iTF_00053788; iTF_00053916; iTF_00054524; iTF_00054652; iTF_00054780; iTF_00052605; iTF_00052701; iTF_00052829; iTF_00053053; iTF_00054621; iTF_00052670; iTF_00053342; iTF_00053790; iTF_00054334; iTF_00054718; iTF_00054942; iTF_00052767; iTF_00054623; iTF_00054719; iTF_00052704; iTF_00052896; iTF_00053056; iTF_00053632; iTF_00054304; iTF_00052553; iTF_00052522; iTF_00053258; iTF_00052651; iTF_00052747; iTF_00053163; iTF_00052236; iTF_00052300; iTF_00052302; iTF_00052430; iTF_00052974; iTF_00053006; iTF_00053032; iTF_00054493; iTF_00053166; iTF_00052303; iTF_00052945; iTF_00052274; iTF_00052338; iTF_00052562; iTF_00052691; iTF_00052564; iTF_00053044; iTF_00053908; iTF_00052801; iTF_00052897; iTF_00052770; iTF_00052802; iTF_00052803; iTF_00052676; iTF_00052814; iTF_00052815; iTF_00052816; iTF_00052913; iTF_00052854; iTF_00052827; iTF_00052800; iTF_00052832; iTF_00052705; iTF_00052610; iTF_00052706; iTF_00053058; iTF_00052643; iTF_00052771; iTF_00052931; iTF_00052708; iTF_00052707; iTF_00052740; iTF_00052421; iTF_00053943; iTF_00052709; iTF_00052805; iTF_00052997; iTF_00053125; iTF_00053221; iTF_00052358; iTF_00052742; iTF_00052806; iTF_00052998; iTF_00053094; iTF_00052711; iTF_00052775; iTF_00052807; iTF_00052797; iTF_00052360; iTF_00052712; iTF_00052713; iTF_00052714; iTF_00052715; iTF_00052716; iTF_00052764; iTF_00053160; iTF_00053480; iTF_00052393; iTF_00053033; iTF_00052490; iTF_00052970; iTF_00054250; iTF_00052331; iTF_00052811; iTF_00052810; iTF_00053131; iTF_00052460; iTF_00053132; iTF_00052301; iTF_00052621; iTF_00052717; iTF_00052941; iTF_00053197; iTF_00052718; iTF_00053070; iTF_00053198; iTF_00052719; iTF_00053167; iTF_00052336; iTF_00052464; iTF_00052560; iTF_00052688; iTF_00053072; iTF_00052721; iTF_00052753; iTF_00052977; iTF_00053105; iTF_00052498; iTF_00052626; iTF_00053106; iTF_00053170; iTF_00053202; iTF_00052499; iTF_00052531; iTF_00052723; iTF_00052851; iTF_00053011; iTF_00052500; iTF_00052724; iTF_00052852; iTF_00053025; iTF_00054306; iTF_00054947; iTF_00054283; iTF_00053101; iTF_00054287; iTF_00054288; iTF_00054289; iTF_00054291; iTF_00054292; iTF_00054294; iTF_00054231; iTF_00054295; iTF_00054302; iTF_00054048; iTF_00052916; iTF_00052373; iTF_00052533; iTF_00052885; iTF_00052534; iTF_00052434; iTF_00053971; iTF_00053823; iTF_00052790; iTF_00053174; iTF_00052727; iTF_00052759; iTF_00052754; iTF_00052755; iTF_00052756; iTF_00052855; iTF_00053079; iTF_00053175; iTF_00052696; iTF_00052888; iTF_00053208; iTF_00053089; iTF_00053102; iTF_00053234; iTF_00053209; iTF_00053212; iTF_00052666; iTF_00052379; iTF_00052443; iTF_00052475; iTF_00052603; iTF_00052667; iTF_00052795; iTF_00053147; iTF_00052893; iTF_00053181; iTF_00053501; iTF_00052414; iTF_00052798; iTF_00052862; iTF_00052894; iTF_00052383; iTF_00052639; iTF_00052671; iTF_00052735; iTF_00052799; iTF_00052831; iTF_00052895; iTF_00054047; iTF_00053152; iTF_00052310; iTF_00052918; iTF_00052791; iTF_00052951; iTF_00052497; iTF_00053010; iTF_00052983; iTF_00054849; iTF_00052248; iTF_00052504; iTF_00052537; iTF_00053049; iTF_00052346; iTF_00052410; iTF_00053050; iTF_00052353; iTF_00052551; iTF_00052411; iTF_00054116; iTF_00054090; iTF_00054541; iTF_00053818; iTF_00054559; iTF_00052956; iTF_00052381; iTF_00052669; iTF_00052733; iTF_00053019; iTF_00052642; iTF_00052438; iTF_00052445; iTF_00052638; iTF_00052734; iTF_00052447; iTF_00054301; iTF_00054844; iTF_00052382; iTF_00053086; iTF_00052255; iTF_00052991; iTF_00052448; iTF_00053098; iTF_00053856; iTF_00053088;
- 80% Identity
- -