Amod087208.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- lola
- Assembly
- GCA_963675035.1
- Location
- OY776115.1:7703857-7733628[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00073 0.025 17.6 1.3 2 23 11 32 10 32 0.97 2 19 0.0017 0.06 16.4 2.7 1 21 51 71 51 72 0.96 3 19 0.00094 0.033 17.3 0.3 1 23 80 103 80 103 0.97 4 19 0.0006 0.021 17.9 2.4 1 23 181 204 181 205 0.94 5 19 0.0022 0.078 16.1 3.2 1 21 218 238 218 239 0.95 6 19 0.0046 0.16 15.1 3.7 1 23 247 270 247 270 0.97 7 19 0.064 2.2 11.5 1.3 2 21 369 388 368 389 0.95 8 19 0.00098 0.034 17.2 0.5 1 23 397 419 397 419 0.98 9 19 0.0075 0.26 14.4 4.6 1 21 432 452 432 453 0.96 10 19 7.1 2.5e+02 5.1 5.2 1 23 461 484 461 484 0.93 11 19 0.025 0.86 12.8 3.1 1 21 538 558 538 559 0.96 12 19 0.53 18 8.6 4.0 1 23 567 590 567 590 0.97 13 19 0.015 0.51 13.5 3.1 1 21 625 645 625 646 0.96 14 19 0.051 1.8 11.8 0.3 1 23 654 677 654 677 0.96 15 19 0.0035 0.12 15.4 0.7 1 20 693 712 693 714 0.95 16 19 0.43 15 8.9 0.0 2 23 723 745 722 745 0.96 17 19 0.0001 0.0035 20.3 0.6 1 21 799 819 799 820 0.96 18 19 0.37 13 9.1 5.3 1 23 828 851 828 851 0.92 19 19 0.0012 0.04 17.0 1.0 2 23 858 880 857 880 0.96
Sequence Information
- Coding Sequence
- ATGACGGAGTGTGGCCAGTCCCCCAGCATCAGCTGTTCAGAGTGTTCCTACCGGACAAAGCGGAGGGAGAACCTCATGCGTCACATGATCAGGCACCTCAAGCTACCAATGGAGCTCGCCTCTACTACCCCGGCCCCGCCCCGCCCCCGCTACCAGTGCCCCCGCTGCCCCCGCAGCTACAAGCACAACATCACGCTGAGGCGCCACCTGAAGCACGAGTGTGGCCTGGTCCCTGGCTACGCTTGCCCCCTGTGCCCCGCCAGATGCAAGCGCAAGGACAACTGGATGCAGCACATTCGCGTTGTGCACAAACAAGACCCCTACCAAGCAACGTTCCACCCTGTTAGAGACGTATTAGCCTCGTGTAACCACCCAATAACGATCACCCTGCATTGCTCCCCCACAGAGAGCACTGCCAAGGACCGCAGTGATGGGTTCAACCCCACGACAGGCAGGTACCTCTGCGCCGTCTGCGGCTGTGACTACAAGTGGCGCAACTCCCTCCTGCGCCACCGCCACGAGTGTGGGCGCGCCAGGCTCTACCAGTGTCCCGAGTGCCCCCACCGGTCCAAGCGGAAGGACAACCTCGCCAAACACATCCTGTTCATCCATCACACAGGTGTACCAACCCCAGACGCCAGCACTGACCGTCACTCGTGCCCCCAGTGCCACAAGACGTACACAAAGCTGTATAATATGACGCGACACCTGCGCCTGGAGTGCTACCAACCTCCGAGGTTCCGCTGTCCCTACTGCGACTACGTCACCAAGCGCAACAACTGCCTGAGACTCCACGTCAAGATGAAGCATCCAAACCTCCCTGAGCCTCAGGACATGCGGAGGGGACGGGGGAGAAGGGAGGAGGGAGGATTTGGAACCAAGGGACAGATGTTCCGCTGCCAAGTTCGCCTGCCCCCGCTGCTGCAAGCTCTATTCCCACCACGGCAGCATGGCACGACACTACCGCCTGGAGTGTGGCGTCACGCCGTCGTTCCAATGCCCATTCTGCCCATACTCGTCACACCGCAAGGGCAGCGTCAACCGTCACGTGGCATTCAAACACTCGCTCGACAACGTCCTGGACTCCACAAACCAGGTCGCAGCGAGTGTCCTCAGTGCCACAAGCTCTACTCCCACCGGGGGAGCATGTTGCGCCACCTCAGGCTGGAGTGTGGGGGAGCAGCCAACTTCCAGTGTCCCATGTGCAGCTATTCATCCTACAGGAAGGGCAACATCAACCGGCACATGATAGTGCATGTACAAGGCGATGACCCCCGCCGCGCGAGACCCAAGTACGAGTGCCCCCGCTGCCACCGCTGCTACTCCCAGAAGTTCAGCATGACACGGCACCTCCGCCTCGAGTGTGGGACTCCCCCCTCCTTCCGCTGCCCCCACTGCCCGTACATGGCCCATCGCAAGGGCAGCATCAATCGTCACGTGACTTACTGTCATCGTGGGACATTCGTCAATGGGACCATCAAAGATTTGGCTGGGATCGTCAGTGCTAAGTTCCCTAACATTGAGGGCCCTGTTGGGCCGCTGGTACTCGGGAGGCCTGGGTACCAGCGGCTCCCCCCTCATGGCAGCCCTGGAGGCCCGCCCCCGCTCAAGCACGAGTGCCCCCGCTGCCACAAGCTGTACTCCCAGCGGTTCTCCATGACCCGCCACATGCGGCTGGAGTGTGGCGTGGCTCCGCAGTTCCGCTGCTCCCACTGCAGCTTCCAGACCCACCGCAAGGGCAACGTGAACCGACACATCGCCATGGTCCACTACAACCAGGGGTGCTCTGACGGGAAGATCAACTGCTTGAGACCACCCTTCTGTAAAACCCTCTTGGCCAACACCATAATAGACGCCAATGGCCAGACCAAGCACCAGTGTCCGCAGTGCAACCGGCTCTACTCCCACTGGCACAGTATGACCAGACACCTGCGGTTGGAGTGTGGACGCCCGCCCCAGTTCAAGTGTCCCTTCTGTGACTTCCAGTCCACCAGGAAGGGCAGCATTAACGCTCACATCGCTGTCAAACACGCCTCGGAGGCAGAGAAGACAGTGGCCGGCCAGCAACAGCAGCGCTACCAATGTTCCCGGTGCGGCAAGCGCTTCACCTACAAGGTGGCCATGTTGAAGCACCGGAGCGAGTGCGGCCGTGAGGGTGCTGCGCTCTCGTGCCCCAAGTGCGCGTTCGTGGCAACTCGCAGGGACGATCTCGACACGCACATCGCCACTGCTCATTACGTTCTCCAAGGTTACAAGAATAAGAAGACCTGGAACTCCAGCCTGAACAGTACGGACAGTGTTAACGAGCAGTTTGACGTAAACCTGTTCAAAGGGTTCCTCCAGGACCCCAGCATGACCATCGTGAGTCTCAACCCCGCCACGGGCAAGACGGAGTACACGTGTCCGCAGTGTGGCAAGGTCTACTCTTACCAAACCACGCTGCTGCGGCACCTCAAGTTCGAGTGCGGCAAGCTGCCAAGGTTCCAGTGCCCGCACTGCCCGTACCGGTGCCACCGCAAGGAGAATATCAAGAGTCACGTTATCGGGAAGCATGAAAAGGGTAAGAAGATTCAATGTCCGATCTGCCCGAAGACCTTTGTTCACAACTTCAGAATGCAAGAGCATATCCGTTTATTTCATGCTTTCAACACTGTACAACTAGAAAGTCAGGGGGCAGAGCCCCAAAAACCCCCTCCACAATCGTCCTTGCAGAAAGAATACCCTTTTAAAAATTCCTATCAATCTCAAAATGTCGTCATAGTCGATCCTTTCTCTCAATTCCCAGCGGAAAATTCAAAAGTCTTTGAATGTGACCCGGATGATCCTGATTATACACCCCATCATACTTCCACTCCGAAAAAAGGGCGAGGACGAAAGCGCCGAACTGCCGCTTACTTTGCTGAGTCCAAGACTGGTCTCGCACCGGTCTATATCAGTATCAACGAGAAGACTGAGACCTCGATGAATTCTGACATGGATACAACTCCCACTCAGAATGGAATTGAAACTGTTGTAATCAAAGAGGAATCTACGATAGAAATCAACGACAGCATGGAAGAACCAAATGACAATGTAGATCCCCTTCCCACCTCTCCAATGTGTGGGGATGATGTacttaaagttattttttaa
- Protein Sequence
- MTECGQSPSISCSECSYRTKRRENLMRHMIRHLKLPMELASTTPAPPRPRYQCPRCPRSYKHNITLRRHLKHECGLVPGYACPLCPARCKRKDNWMQHIRVVHKQDPYQATFHPVRDVLASCNHPITITLHCSPTESTAKDRSDGFNPTTGRYLCAVCGCDYKWRNSLLRHRHECGRARLYQCPECPHRSKRKDNLAKHILFIHHTGVPTPDASTDRHSCPQCHKTYTKLYNMTRHLRLECYQPPRFRCPYCDYVTKRNNCLRLHVKMKHPNLPEPQDMRRGRGRREEGGFGTKGQMFRCQVRLPPLLQALFPPRQHGTTLPPGVWRHAVVPMPILPILVTPQGQRQPSRGIQTLARQRPGLHKPGRSECPQCHKLYSHRGSMLRHLRLECGGAANFQCPMCSYSSYRKGNINRHMIVHVQGDDPRRARPKYECPRCHRCYSQKFSMTRHLRLECGTPPSFRCPHCPYMAHRKGSINRHVTYCHRGTFVNGTIKDLAGIVSAKFPNIEGPVGPLVLGRPGYQRLPPHGSPGGPPPLKHECPRCHKLYSQRFSMTRHMRLECGVAPQFRCSHCSFQTHRKGNVNRHIAMVHYNQGCSDGKINCLRPPFCKTLLANTIIDANGQTKHQCPQCNRLYSHWHSMTRHLRLECGRPPQFKCPFCDFQSTRKGSINAHIAVKHASEAEKTVAGQQQQRYQCSRCGKRFTYKVAMLKHRSECGREGAALSCPKCAFVATRRDDLDTHIATAHYVLQGYKNKKTWNSSLNSTDSVNEQFDVNLFKGFLQDPSMTIVSLNPATGKTEYTCPQCGKVYSYQTTLLRHLKFECGKLPRFQCPHCPYRCHRKENIKSHVIGKHEKGKKIQCPICPKTFVHNFRMQEHIRLFHAFNTVQLESQGAEPQKPPPQSSLQKEYPFKNSYQSQNVVIVDPFSQFPAENSKVFECDPDDPDYTPHHTSTPKKGRGRKRRTAAYFAESKTGLAPVYISINEKTETSMNSDMDTTPTQNGIETVVIKEESTIEINDSMEEPNDNVDPLPTSPMCGDDVLKVIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -