Amod082647.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- -
- Assembly
- GCA_963675035.1
- Location
- OY776114.1:94983718-95009864[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.93 32 7.8 6.9 1 21 62 82 62 83 0.94 2 17 0.44 15 8.9 0.4 3 23 91 111 89 111 0.90 3 17 0.19 6.6 10.0 0.2 2 23 119 141 118 141 0.94 4 17 1.8e-05 0.00063 22.7 0.7 2 23 148 169 147 169 0.98 5 17 0.00016 0.0056 19.7 1.3 1 23 175 197 175 197 0.97 6 17 0.00055 0.019 18.0 1.6 1 23 203 225 203 225 0.99 7 17 8.9 3.1e+02 4.7 0.6 1 11 237 247 237 247 0.94 8 17 0.055 1.9 11.7 3.0 1 23 246 269 246 269 0.96 9 17 0.042 1.4 12.1 0.6 1 23 278 300 278 300 0.97 10 17 0.21 7.2 9.9 1.4 1 23 356 379 356 379 0.96 11 17 0.0024 0.085 16.0 5.2 1 23 396 419 396 419 0.98 12 17 0.00054 0.019 18.0 0.1 1 23 431 453 431 453 0.93 13 17 3.7e-06 0.00013 24.8 2.7 1 23 459 481 459 481 0.98 14 17 0.00061 0.021 17.9 1.6 1 23 487 509 487 509 0.98 15 17 0.035 1.2 12.3 0.6 1 23 515 537 515 537 0.96 16 17 1.9e-05 0.00065 22.6 1.1 1 23 543 565 543 565 0.98 17 17 0.00011 0.0039 20.2 1.7 1 23 571 594 571 594 0.97
Sequence Information
- Coding Sequence
- ATGGTCATAAACATGCGCCAaTCAGAGTCGCAAGCAAGGCAACATTTCGCCGAGGCTCACAACGAGAGTTCCTCTACGCTGGGCTGTCCCGAGTGCAATGCTGAGGTAGGCTCGGAGCAAGAGTATCTGAAGCACTTCATGGAGGCTCACTGCGCCATGTCCATGTTCAAAGTGCCTTCGTCATACAGCTGCTGCGTCTGCAGCAACAACTTCCGGTCGCAGTACCATCTCATCAAACACACGTGTAACGTTGTGACAGATGAGTTGTTCTGCAGCGAGTGTGACAAAGGGTTCCCCACCAAGGCGAGGTTTGTGTTCCACCTGCAGATTCACCAGTCTGGAGGCCAGCGCATGCGATGTGACGAGTGCCTGCTGGTCTTCTCTAACGAGGATGCCTTCTACGACCATGTCAGGTTCCAGCATGAGCCGGACGAGCAGGTGCAGTGCCAGGTGTGTGAGAAGGTGTTCAAGAACTCGGTCAGCCTCAGTATGCACATGCGGCGGCACCAGCCCAACCGCGACCACGAGTGCCAGGAGTGTGGGAAGAGGTTCCAGAACGCGCAGACACTGCGGGAACACATGGTGAGCCACATGTCGGTGAAACCGTTCCAGTGTCACATCTGCGGGGCTTATCTCTCACGCCTGTCCCGCCTGAGGATACACCTGCGCACCCACTCCGTCAAGGCATCCAAGGCCTCCATGAAGGCTTACAAGTGCTCTGTGTGCACCCAGGTGTTCCGCTGCGAGTTCTGCGACGCGTGCTTCCAGAAGACGACAGAGCTGAACGCCCACCGCAAACAATACCACAGCGATCCACATGCAGCAAATGCATACACATGCAGCGTCTGTGGAGCACAATTCTCCACCTATGCACGAGTCACTACGCACAAACTGTCTCATGGAATCAACACCGAGACTTTAATAGTGCCTGATGAAGTGAACAAAGGGGAAGACTCATTTGTAATACCGCAGTACTTCTTGTGCCACGAGTGTGACAAGCGCTGCTTGCACTACACCTACATGAGTCTCCACCGGAGGTTCCAGCACGCCAGCGGCAAGCCCATCTTCACCTGCACTGTGTGTGGGGATAAGTTTGCCACCTCCTGGTCACTGCAGTTTCACAGgaagaaacagcacaatctggTTGACACGAAGGAGGTGAGCTGCGAAGGAGTGAACAGCCTGTACCACTGCCAGGTGTGTGACAAGCCGTATGTGACGGAGACGAGCCTGGAGCATCACATCAGGAAGTGTCATGAGACAGACGACGGCGACGAAGCTGGCTCCAACTATATCTGCGAGACTTGCGGGAAAACATTCCAGTTCAAGAGTGCTCTAGAAGCGCATGCCGATGCCCACCGTGGTCTGAAGCGCTTCAAGTGCACCGTCTGTGATAAGCGGTTCACGCACCGCGCCGGGCTGATACGCCACATGAAGCTGCACTCGGAGACAGACACATTCGAGTGCGAGTTCTGCGGCAAGAAGTTCCGTGACCGCACCGAGCGCGAGAACCACCGTCGAGCGCACACCGGCGAACGGCCCTTCATGTGCGACGTGTGCGGCCGGACCTTCCACACCAGGGCTGTGTGGCTCGACCACTCCAGGATCCACCAAGACATCAGGCCGTACCAGTGCGATATCTGCAGCCAGTCGTTCCGCCGCTCGTACGCGCTCAAGAGCCACTACCTGATACACACCGGGGAGCGCCCCTTCTCCTGCGATGTCTGTGGAAAGACCTTCCGCCTCAAGCAGACGCTCTTCGCACACAGGAAGAAAGAACACCAAACCAACGACGACTCGGAACAACTGATACTACCCGACGAGGCCTCGTTGATCGAGGAAGACTCACCGTATGTGATACTGATTCCTACAAAAAACAATTGA
- Protein Sequence
- MVINMRQSESQARQHFAEAHNESSSTLGCPECNAEVGSEQEYLKHFMEAHCAMSMFKVPSSYSCCVCSNNFRSQYHLIKHTCNVVTDELFCSECDKGFPTKARFVFHLQIHQSGGQRMRCDECLLVFSNEDAFYDHVRFQHEPDEQVQCQVCEKVFKNSVSLSMHMRRHQPNRDHECQECGKRFQNAQTLREHMVSHMSVKPFQCHICGAYLSRLSRLRIHLRTHSVKASKASMKAYKCSVCTQVFRCEFCDACFQKTTELNAHRKQYHSDPHAANAYTCSVCGAQFSTYARVTTHKLSHGINTETLIVPDEVNKGEDSFVIPQYFLCHECDKRCLHYTYMSLHRRFQHASGKPIFTCTVCGDKFATSWSLQFHRKKQHNLVDTKEVSCEGVNSLYHCQVCDKPYVTETSLEHHIRKCHETDDGDEAGSNYICETCGKTFQFKSALEAHADAHRGLKRFKCTVCDKRFTHRAGLIRHMKLHSETDTFECEFCGKKFRDRTERENHRRAHTGERPFMCDVCGRTFHTRAVWLDHSRIHQDIRPYQCDICSQSFRRSYALKSHYLIHTGERPFSCDVCGKTFRLKQTLFAHRKKEHQTNDDSEQLILPDEASLIEEDSPYVILIPTKNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -