Amod036545.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Allygus modestus
Gene Symbol
-
Assembly
GCA_963675035.1
Location
OY776112.1:1833749-1855014[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 3.8 1.3e+02 5.9 0.5 1 10 403 412 403 423 0.95
2 13 0.00059 0.02 17.9 1.1 1 23 430 454 430 454 0.91
3 13 0.056 1.9 11.7 0.2 2 23 483 505 482 505 0.92
4 13 9.5e-06 0.00033 23.5 3.2 1 23 511 533 511 533 0.99
5 13 0.079 2.8 11.2 0.4 1 23 543 566 543 566 0.91
6 13 3.3e-06 0.00011 25.0 3.6 1 23 572 594 572 594 0.98
7 13 0.0004 0.014 18.4 2.1 1 23 600 622 600 622 0.98
8 13 0.0033 0.11 15.6 6.6 1 23 628 650 628 650 0.98
9 13 1.5e-06 5.3e-05 26.0 1.6 1 23 656 678 656 678 0.99
10 13 0.00014 0.0048 19.9 3.4 1 23 684 706 684 706 0.96
11 13 0.83 29 8.0 4.3 2 23 713 734 712 734 0.97
12 13 2.8e-05 0.00099 22.0 0.4 1 23 740 762 740 762 0.98
13 13 2.8e-06 9.8e-05 25.2 2.9 1 23 768 790 768 790 0.98

Sequence Information

Coding Sequence
ATGTCAGGTGGTTCCCAGGCCCCGGGTGAAGGGACCATGAACAATGTCTCTGAACACTCGTACAGCCAGGAGGAGATGTTGACCACAGTGACAGAAGACGTGGAACTGGTGGAGGGGCTACTGGACGACTACGGGCAACAGCTCAGCGTCGAAGGAGGAGATGTTGACCACAGTGACAGAAGACGTGGAACTGGTGGAGGGGCTACTGGACGACTACGGGCAACAGCTCAGCGTCGAAGgggaggGACCATGAACAATGTCTCTGAACACTCGTACAGCCAGGAGGAGATGTTGACCACAGTGACAGAAGACGTGGAACTGGTGGAGGGGCTACTGGACGACTACGGGCAACAGCTCAGCGTCGAAGGAGGAGATGTTGACCACAGTGACAGAAGACGTGGAACTGGTGGAGGGGCTACTGGACGACTACGGGCAACAGCTCAGCGTCGAAGgggaggGACCATGAACAATGTCTCTGAACACTCGTACAGCCAGGAGGAGATGTTGACCACAGTGACAGAAGACGTGGAACTGGTGGAGGGGCTACTGGACGACTACGGGCAACAGCTCAGCGTCGAAGgGACCATGAACAATGTCTCTGAACACTCGTACAGCCAGGAGGAGATGTTGACCACAGTGACAGAAGACGTGGAACTGGTGGAGGGGCTACTGGACGACTACGGGCAACAGCTCAGCGTCGAAGtttttggcGAGAACGGTTCAATGTACGGACCGGAAGATCCGATGGTGTTGAAAGCCGATGGGCTGGAGAAACCTAGGAAAAAGAGGGGGAGACCGAAGAAAGTAGCTCAGAGTGAACCTGATATCTTGACAGACAGTTCGGCCAGTGGGATGGTCGAGATTGCGGAGGAGGAACCGAGGAAAGACGACAAGAGCAAAGATGATGATGCGGAGGGCAGGACCCGCAGGAAAAGGAAGATCCCTCAGAGGTACAAGGAGGCTGTGCAAGGCAAGGAGTTGGAGAGGATATTCAAGGAGGAGGGGGTGATAGACGAGGAGGATGACAAGGAGGTGGTCATGTTGGATGTGGCGGAGGAGCAGACCCCCGCGCCGGTCAGCAACGCGCAGCCAGTCAGCGAGGTGATTGGGCACTTGGAAACGCAAGAAGGTCAAGATCTGGGAGAAGTGATtgtggtaaataaaataaaatcgagGAGAAAATATCCGCTGAGGAAGAAAATACGTTACCAGTGTGAAATATGTGGAAGAGGTTTTCTACACCATGGAAGATACATGTTTCACAAgtCAATTCACAAAGGAGTTAAATTTGAGTGCACAGCCTGTCAAAAAAGGTTTTCAACAAAAGACAATTTTGAATTGCATCAGAAGATATCAGGACATACCGGTGAAGGTATAATTGAAAGCCTAGATGAGGAAAATGGGGAAGAAAAATCACCAGAGGAGGCAGTAAAATCAGTAGGAATAAAGTGCAAATACTGTGAAAAAGTGTTGACTTCTAGACAAGGCTACGAGGCCCACTTGTCTGCTGATCACCTCGACTCCAGACCTTACCAGTGTGATGTCTGCAACAAAAGCTTCACCCACCAAACCTCCCTCAAGAGTCATGTGCTGACCCACGAACAAAGCAGTGGCAAGGAGAAGGGCTACCCGTGCAATCTGTGCGGCAAGAAGCTGAACCACCCCAGCTCTGTGCTGTACCACCGCGAGGCTGAGCACAACAACGGGAGGCGCTTCGTCTGCAACAAGTGCGGCAAGAGTTTCAAGCACAAGCAGCTGTTGCAGCGGCATCAGCTGGTCCACTCGGATATCAGGCCGTTCTCTTGCAACCTATGTTCGGCCAGTTTCAAGACCAAGGCCAACCTGATGAACCACCACGCGACCCACACTGGAGAGAAGAAGCACAAGTGTGAGCATTGCGGACAGCAGTTCGCCCACAAGACCAGCCTCACGCTGCACTACCGCTGGCACTCGGGTCAGAAGCCGTACCAGTGCACCGTGTGCAAGAAGATGTTCTCACAGAAAGGCAACCTGCAGGAGCACTACAGGATCCACACCGGCGAGAAGCCCTTCCTCTGCAACATCTGCAGCCGCAAGTTCACCACCTCCTCCCAGTACAAGCTGCACATGAAGCGGCACACGGGCGAGCGGCCGTGGAAGTGTGAGTTCTGTGGCAAGTCGTTCCTGCACAAGGACGCGTGGAAGTGCCACATCCGGCGACACAAGGGCGAGAAACCCTTCCAGTGCAACATCTGCCAGCGCGAGTTCCCCGAGCAGTGGGCGCTCAAGAAACACATGCGGCTGCACACGGGTGAGAAGCCATACTCCTGTCAGATTTGCGGCAAGACGTTTGCTGACTGCTCAAACCTCACAAAGCACAAAAAGGTACACGCTCGAGAAGCAAAGATAGAAGAGGAGGAGCAGTCGGGTGTTGAAGGTGTGGACTTGTCAGTGTGGAACATCATCCAGTCACACCTCCAGGAGAACGCTGCGCTGGCTGACAAGGACGCGCTCAAACATGACAACGACGTGCAGCAGATAATCTATGTTACCTACCAACCGGACGGGGAGGAGGCTGCGCCTGTCAAACTGAAGGAGAGCCCCAAGTTCATCTTGCCCAGTCTGATGGGACCCGATGTGTCACTGCCCAGTGAGCCGCTGACGTTGCCCTCTCAACCACTGCAGGTCACCGATGACCAGGGCAACCCCATACAGTTCACCATGCAGGACGGCAGCTCACTGCAGGTACAGTCAAAGCAGGGCATGACAGAGTACTGTCAATCACAGTGTGCTTGTGAGTTTGTAGAATGTCAAGTGTCCTAG
Protein Sequence
MSGGSQAPGEGTMNNVSEHSYSQEEMLTTVTEDVELVEGLLDDYGQQLSVEGGDVDHSDRRRGTGGGATGRLRATAQRRRGGTMNNVSEHSYSQEEMLTTVTEDVELVEGLLDDYGQQLSVEGGDVDHSDRRRGTGGGATGRLRATAQRRRGGTMNNVSEHSYSQEEMLTTVTEDVELVEGLLDDYGQQLSVEGTMNNVSEHSYSQEEMLTTVTEDVELVEGLLDDYGQQLSVEVFGENGSMYGPEDPMVLKADGLEKPRKKRGRPKKVAQSEPDILTDSSASGMVEIAEEEPRKDDKSKDDDAEGRTRRKRKIPQRYKEAVQGKELERIFKEEGVIDEEDDKEVVMLDVAEEQTPAPVSNAQPVSEVIGHLETQEGQDLGEVIVVNKIKSRRKYPLRKKIRYQCEICGRGFLHHGRYMFHKSIHKGVKFECTACQKRFSTKDNFELHQKISGHTGEGIIESLDEENGEEKSPEEAVKSVGIKCKYCEKVLTSRQGYEAHLSADHLDSRPYQCDVCNKSFTHQTSLKSHVLTHEQSSGKEKGYPCNLCGKKLNHPSSVLYHREAEHNNGRRFVCNKCGKSFKHKQLLQRHQLVHSDIRPFSCNLCSASFKTKANLMNHHATHTGEKKHKCEHCGQQFAHKTSLTLHYRWHSGQKPYQCTVCKKMFSQKGNLQEHYRIHTGEKPFLCNICSRKFTTSSQYKLHMKRHTGERPWKCEFCGKSFLHKDAWKCHIRRHKGEKPFQCNICQREFPEQWALKKHMRLHTGEKPYSCQICGKTFADCSNLTKHKKVHAREAKIEEEEQSGVEGVDLSVWNIIQSHLQENAALADKDALKHDNDVQQIIYVTYQPDGEEAAPVKLKESPKFILPSLMGPDVSLPSEPLTLPSQPLQVTDDQGNPIQFTMQDGSSLQVQSKQGMTEYCQSQCACEFVECQVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-