Amod082965.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- Glis3
- Assembly
- GCA_963675035.1
- Location
- OY776114.1:100873811-100886847[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.96 34 7.8 0.1 2 23 121 145 120 145 0.91 2 25 0.96 34 7.8 0.1 2 23 166 190 165 190 0.91 3 25 0.96 34 7.8 0.1 2 23 211 235 210 235 0.91 4 25 0.96 34 7.8 0.1 2 23 245 269 244 269 0.91 5 25 0.96 34 7.8 0.1 2 23 376 400 375 400 0.91 6 25 0.96 34 7.8 0.1 2 23 421 445 420 445 0.91 7 25 1.1 40 7.6 0.1 2 23 466 490 465 490 0.91 8 25 1.1 39 7.6 0.0 2 23 511 535 510 535 0.91 9 25 1.1 39 7.6 0.0 2 23 556 580 555 580 0.91 10 25 0.96 34 7.8 0.1 2 23 601 625 600 625 0.91 11 25 0.53 18 8.6 0.1 2 23 646 670 645 670 0.91 12 25 0.96 34 7.8 0.1 2 23 691 715 690 715 0.91 13 25 0.96 34 7.8 0.1 2 23 772 796 771 796 0.91 14 25 0.96 34 7.8 0.1 2 23 817 841 816 841 0.91 15 25 0.96 34 7.8 0.1 2 23 862 886 861 886 0.91 16 25 6.4 2.2e+02 5.2 0.0 2 23 907 931 906 931 0.91 17 25 0.96 34 7.8 0.1 2 23 952 976 951 976 0.91 18 25 1.1 40 7.6 0.1 2 23 997 1021 996 1021 0.91 19 25 1.1 40 7.6 0.1 2 23 1042 1066 1041 1066 0.91 20 25 0.96 34 7.8 0.1 2 23 1087 1111 1086 1111 0.91 21 25 1.5 52 7.2 0.1 2 23 1132 1156 1131 1156 0.91 22 25 0.96 34 7.8 0.1 2 23 1177 1201 1176 1201 0.91 23 25 0.00035 0.012 18.6 0.4 2 23 1244 1267 1243 1267 0.96 24 25 0.075 2.6 11.3 1.7 1 23 1273 1297 1273 1297 0.90 25 25 0.00039 0.013 18.5 0.4 1 23 1303 1327 1303 1327 0.96
Sequence Information
- Coding Sequence
- ATGGAGCGTAGAAGGGGGGGGTTGATAGTGGTGTGCCAGGTAGGATGGAGCCTAGAGTGGGGGGTTGACTGTCGGGGCATTTGTGGGTTGATAGTGGTCTGCCAGATAGGATGGAGCCTAGGGGTGGGGGGTGGGTTGATAGTGGACTTCCAGGTTGATGGTGTCACTGAGAGCAGGGGGGAATACGGTCATTTACTTTGTAAAGACAAGCACAACAATGAAAACAGCTATACTTCATACTATACAAGTTATCCAGAGAACCAGGTTGTGATTCAACAGTCAAAGGGAGAACTTCTAGAGAAGCTGAGACAACGAGAGACGGCGAGTGTAGGCCTACCACAGACTGATAAGTGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCGTGCGCCACATAGAGAAGACCCACGTGGAGCTGCAACTGTCACGTGTCGAGTGTTATACCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCTCTCGTGCGCCACATAGAGAAGACCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCTCTCGTGCGCCACATAGAGAAGACCCACGTGGAGCTGCGACTGTCACGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCGTGCGCCACATAGAGAAGACCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCATGCGCGACATAGAGAAGACCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCGTGCGCCATATAGAGAAGACCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCGTGCGCCACATAGAGAAGACCCACGTGGAGCTGCGACTATCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCGTGCGCCACATAGAGAAGACCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCGTGCGTCACATAGCGAAGACCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCGTGCGTCACATAGCGAAGATCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGTCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCGTGCGTCACATAGCGAAGATCCACGTGGAGCTGCAACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCTCTCGTGCGCCACATAGAGAAGACCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCATGCGCCACATAGAGAAGACCCACGTGGAGCTGCGACTATCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCGTGCGCCACATAGAGAAGACCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGCGAAGACCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCGTGCGCCACATAGAGAAGACCCACGTGGAGCTGCAACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTAGGCCAGGCCGCGCTCGTGCGCCACATAGAGAAGACCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCGTGCGCCACATAGAGAAGACCCACGTGGAGCTGCGACTATCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCGTGCTCCACATAGAGAAGGCCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTTGTGCGCCACATAGAGAAGACCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCGTGCGTCACATAGCGAAGACCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCGTGCGTCACATAGCGAAGACCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCTCTCGTGCGCCACATAGAGAAGACCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCATGTTCGTGGGCCAGGCCGCTCTCGTGCGCCACATAGAGAAGACCCACGTGGAGCTGCGACTGTCACGTGTCGAGTGTTATCCCCGAGTGTTGTCCGCAGGTCTGCTGGAGTGCCGCTGGGAGCATTGCTGGGCCGTGTTCGTGGGCCAGGCCGCGCTCGTGCGCCACATAGAGAAGACCCACGTGGAGCTGCGCCGCGCGGATGAGTTTGCGTGTCTGTGGCAGGACTGCCCGCGTCGCACCCGGCCCTTCAACGCCCGCTACAAGCTGCTCATCCACATGCGCGTGCACTCTGGCGAGAAGCCCAACAAGTGTCCGTTCCCCGGCTGTCTGAAGGCATTCTCGCGGCTGGAGAACCTCAAGATCCACCAGCGCTCCCACACCGGTGAGCGGCCCTACTGCTGCCAGTTCCCCGCCTGCGCCAAGGCCTTCAGCAACAGCTCGGACCGCGCCAAGCACCAGCGCACCCACTACGACACGAAGCCGTATGCCTGCCAGGTGGCTGGCTGCCGCAAGCGCTACACCGACCCGAGCTCCCTGCGCAAACACATCAAGAACCACGCCGGCGCGGCCGCCTGCAAGGCCAAGAAACTGGTGAGAAACGTACCACTAGgactcattttaatttaa
- Protein Sequence
- MERRRGGLIVVCQVGWSLEWGVDCRGICGLIVVCQIGWSLGVGGGLIVDFQVDGVTESRGEYGHLLCKDKHNNENSYTSYYTSYPENQVVIQQSKGELLEKLRQRETASVGLPQTDKCLLECRWEHCWAVFVGQAALVRHIEKTHVELQLSRVECYTRVLSAGLLECRWEHCWAVFVGQAALVRHIEKTHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVRHIEKTHVELRLSRLLECRWEHCWAVFVGQAALVRHIEKTHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALMRDIEKTHVELRLSRVECYPRVLSAGLLECRWAVFVGQAALVRHIEKTHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVRHIEKTHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVRHIEKTHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVRHIAKTHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVRHIAKIHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVRHIAKIHVELQLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVRHIEKTHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALMRHIEKTHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVRHIEKTHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVAKTHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVRHIEKTHVELQLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVRHIEKTHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVRHIEKTHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVLHIEKAHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVRHIEKTHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVRHIAKTHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVRHIAKTHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVRHIEKTHVELRLSRVECYPRVLSAGLLECRWEHCWAMFVGQAALVRHIEKTHVELRLSRVECYPRVLSAGLLECRWEHCWAVFVGQAALVRHIEKTHVELRRADEFACLWQDCPRRTRPFNARYKLLIHMRVHSGEKPNKCPFPGCLKAFSRLENLKIHQRSHTGERPYCCQFPACAKAFSNSSDRAKHQRTHYDTKPYACQVAGCRKRYTDPSSLRKHIKNHAGAAACKAKKLVRNVPLGLILI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -