Amod016875.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- -
- Assembly
- GCA_963675035.1
- Location
- OY776111.1:202071147-202076513[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.7 1.6e+02 5.6 0.0 2 23 196 217 195 217 0.89 2 17 0.62 22 8.4 0.5 1 20 256 275 256 277 0.93 3 17 0.046 1.6 11.9 3.5 2 23 284 305 284 305 0.95 4 17 0.023 0.8 12.9 0.5 2 23 312 334 312 334 0.94 5 17 1.7e-05 0.0006 22.7 5.4 1 23 340 362 340 362 0.96 6 17 2.2e-05 0.00078 22.4 3.3 1 23 371 394 371 394 0.94 7 17 0.1 3.6 10.8 0.5 1 23 404 427 404 427 0.96 8 17 8.2e-05 0.0029 20.6 0.3 1 23 448 470 448 470 0.94 9 17 0.057 2 11.7 0.1 1 23 476 498 476 498 0.97 10 17 0.0068 0.24 14.5 1.9 1 23 516 538 516 538 0.97 11 17 0.018 0.63 13.2 3.0 1 23 544 566 544 566 0.98 12 17 6e-06 0.00021 24.2 0.7 1 23 580 602 580 602 0.99 13 17 1.3e-05 0.00045 23.1 0.5 1 23 608 630 608 630 0.98 14 17 0.015 0.52 13.5 0.2 1 23 636 658 636 658 0.97 15 17 0.0077 0.27 14.4 3.4 1 23 664 686 664 686 0.98 16 17 0.00011 0.0038 20.2 0.8 1 23 692 714 692 714 0.99 17 17 0.00041 0.014 18.4 0.7 3 23 722 743 721 743 0.96
Sequence Information
- Coding Sequence
- ATGACGAAGATCCTGCGTGTCAGCATTCGTAGGTGTGGCAACTCTCAGCGGTTGTCAGGAGCTGATTTACTTAACTCTGTGTTTGGAACTTCAGATGGCGAAGACTCACAAGACAGCAAGTTATCAGAACTAGGAAATACAAACAAAGCTAAATCATTATTCTGCTGTCCATTATGTACCTGTGGAAAGATGATCACCAAGAGTGGTATATACAAAGTCAAGCATGATTCATGTAAGTCTGAAAGCGTCCATGGAAATTACAGTGAAAAACAAGAAATTAATTCACATGATACTTCTGAAGATATTGATCTAAAAAAAATTGAAGAAgacaatatagaaaatatactgGAGAAAGAAAATAATCCAAAAAAAGAACCTAGCAAGCCCAGCAGCAATCAACAACAGATGTGGAACACACAAGATTATTCTCTTAAAATACCTGACTTAGATATGGAAACATTATACAATGATCCAGATGGTATTGTTGGAATGGAATTAGATTCAATACCAGAGGATGAGCCTTGGGGTAAAATTGAAGCTAAACAGGAAACAAAGGTTGTTGTGAAAGGAGAAAAGGAATCTTTAGTTTGTAGACTGTGTGGAGTAGAATTTTCCGAGTTGACTGCTTTATTGGACCATTCTGAGGACCATTCAGATATAGATTGTTTTCCCTGCACTGTCTGTGAGCAGTGGTTTAGTAGCAAGCCCGTGCTGGATACTCACTTTGTTGAAAACCATTACGAACATAAAGATGCTAGTAATTTGCACCGATGTGAATCTTGTGGTTTAGGTTTTAAATCTGCAATCAGATTAGAAACGCATGTCTGTGGATCTAACACAGGTTCCAACAGGTGTCCTCATTGCAATAAGTCATTTAGATCTGAGGCGAGGTTGGAATTCCATCAAAGGTTTCATGAGGGAGCTAAACCCGGGTATTGTGATATCTGCCAAAAAACTTTTCCGGACGAATTGAAACTGTACAAGCATACAATGTACTTGCATTCTCAGAATAAAGGACATTGCTGTGAGGAGTGTGGCAAAGTTTTTAGATCCAATAGCTCACTTAGATACCACCAGAGATCACACCAAGGTGAGGATATCATGAAACCCTATCCCTGTGAATACTGTGGTAAATGTTTCATTCGAAAGAGCATGTTGAGAAATCACTTTATGAACACTCACAAAGACAAAACTCAAGAAGGAACATGTTTCACTTGCAAGCTTTGTTTCGAAGCATTTCCAAGCACAGATCATGCTGTAAACCATATGGATATAATGCACATTCCAGAATGTAGCGGTGAGACGACATATAGTTTTGAAATGCATACTGTGAAGCGGCTTTACCTTTGTGAATATTGTGAGAGGAGCTTTACAGATCCTGCCAACCTCAACAGTCACAGAGAGCAACATCCACCGGAGTATCCTTATCAGTGTAAACTGTGTAATGAAGCTTACTCCGCTGCCTCGTTGCTGGGGGAACACAAAAAACTCCACTTTGCAGGAGGCCTTCGAGATTACATGACTGAGTTTAcagtcccaaccgtctacatgtGCGAGTACTGCGAACGTTGCTTCATGAACAGTGTGAAACTTTCAGAGCATCTGACTGTACATTTTGGCGAAGAACCTTATCACTGTCGCTTTTGTGACAAGAAATTCAAAACGAATGCAGAGGCTGCTGATCATCGCCAAACTCATGATCAATCTTTATCCCCTATAGATGACTCGTACAGGCCATACGAGTGCCACTATTGTCCCAAGTCGTTTTCGATAGAAGACGCTCTCGTAAAACACATCAGGATGCATACCGGGGAAAAGCCGTTCATCTGCGACCAGTGCGGGAAGGGATTCTCCCAGAGCTCGGGCCTCTACACTCACCAGAAGGTGCACTCGGACGAGCGACCCTACAACTGTCCCGTGTGTCCCAGGACCTTCAAGATCAAAGGAGACAGAGACGTGCACGTGAGGAAGCACTCGGGAGACCGGCCCTACAAGTGCGACTTCTGCGGGAAGGCGTTCATGACGCAGCACGTGTACAGCCAGCACAGGAAGATACACACAGGGGAACGCCCTTACCGCTGTGACGTGTGTGGTATTGCGTTCCGACGCTCGCATGTTCTCACAGTGCACAAGAGAATACACACTGGCGAGAAACCTAACATCTGTGATATCTGCGGCAAACGATATCGACAGAAAGGGGATATGTTGAAACATCGCAGGCTTCAGCATAACATTGTCAAAGTTAGAATTCAGAAAATAGAGTTTTAG
- Protein Sequence
- MTKILRVSIRRCGNSQRLSGADLLNSVFGTSDGEDSQDSKLSELGNTNKAKSLFCCPLCTCGKMITKSGIYKVKHDSCKSESVHGNYSEKQEINSHDTSEDIDLKKIEEDNIENILEKENNPKKEPSKPSSNQQQMWNTQDYSLKIPDLDMETLYNDPDGIVGMELDSIPEDEPWGKIEAKQETKVVVKGEKESLVCRLCGVEFSELTALLDHSEDHSDIDCFPCTVCEQWFSSKPVLDTHFVENHYEHKDASNLHRCESCGLGFKSAIRLETHVCGSNTGSNRCPHCNKSFRSEARLEFHQRFHEGAKPGYCDICQKTFPDELKLYKHTMYLHSQNKGHCCEECGKVFRSNSSLRYHQRSHQGEDIMKPYPCEYCGKCFIRKSMLRNHFMNTHKDKTQEGTCFTCKLCFEAFPSTDHAVNHMDIMHIPECSGETTYSFEMHTVKRLYLCEYCERSFTDPANLNSHREQHPPEYPYQCKLCNEAYSAASLLGEHKKLHFAGGLRDYMTEFTVPTVYMCEYCERCFMNSVKLSEHLTVHFGEEPYHCRFCDKKFKTNAEAADHRQTHDQSLSPIDDSYRPYECHYCPKSFSIEDALVKHIRMHTGEKPFICDQCGKGFSQSSGLYTHQKVHSDERPYNCPVCPRTFKIKGDRDVHVRKHSGDRPYKCDFCGKAFMTQHVYSQHRKIHTGERPYRCDVCGIAFRRSHVLTVHKRIHTGEKPNICDICGKRYRQKGDMLKHRRLQHNIVKVRIQKIEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -