Basic Information

Transcription Factor Domain

TF Family: SAND
Domain: SAND domain
PFAM: PF01342
TF Group: Other Alpha-Helix Group
Description: The DNA binding activity of two proteins has been mapped to the SAND domain. The conserved KDWK motif is necessary for DNA binding, and it appears to be important for dimerisation [1]. This region is also found in the putative transcription factor RegA from the multicellular green alga Volvox cateri. This region of RegA is known as the VARL domain [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0093 2.2e+02 4.2 0.1 11 38 7 35 2 37 0.89

2 9 0.0094 2.3e+02 4.2 0.1 11 38 36 64 30 65 0.88

3 9 0.0054 1.3e+02 5.0 0.0 11 39 65 94 59 105 0.87

4 9 0.0083 2e+02 4.4 0.1 11 38 94 122 87 124 0.88

5 9 0.0086 2.1e+02 4.3 0.1 11 38 123 151 117 153 0.88

6 9 0.01 2.5e+02 4.1 0.1 11 38 152 180 147 181 0.88

7 9 0.0086 2.1e+02 4.3 0.1 11 38 181 209 175 211 0.88

8 9 0.0086 2.1e+02 4.3 0.1 11 38 210 238 204 240 0.88

9 9 0.0056 1.3e+02 4.9 0.1 11 39 239 268 234 281 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0093	2.2e+02	4.2	0.1	11	38	7	35	2	37	0.89
2	9	0.0094	2.3e+02	4.2	0.1	11	38	36	64	30	65	0.88
3	9	0.0054	1.3e+02	5.0	0.0	11	39	65	94	59	105	0.87
4	9	0.0083	2e+02	4.4	0.1	11	38	94	122	87	124	0.88
5	9	0.0086	2.1e+02	4.3	0.1	11	38	123	151	117	153	0.88
6	9	0.01	2.5e+02	4.1	0.1	11	38	152	180	147	181	0.88
7	9	0.0086	2.1e+02	4.3	0.1	11	38	181	209	175	211	0.88
8	9	0.0086	2.1e+02	4.3	0.1	11	38	210	238	204	240	0.88
9	9	0.0056	1.3e+02	4.9	0.1	11	39	239	268	234	281	0.87

Coding Sequence: ATGACGCTACTTACGTGGTGTCTAGCCTCACGCGCAACGTTTACCAGTAACAGAGTTACCTATGGCCAGAAGTTCCGTTGTATCCTCATGACGCTACTTACGTGGTGTCTAGCCTCACGCGCAACGTTTACCAGTAACAGAGTTACCTATGGCCAGAAGTTCCGTTGTATCCTCATGACGCTACTTACGTGGTGTCTAGCCTCACGCGCAACGTTTACCAGTAACAGAGTTACCTATGGCCAGAAGTTCCGTTGTATCCTCATGACGCTACTTACGTGGTGTCTAGCCTCACGCGCAACGTTTACCAGTAACAGAGTTACCTATGGCCAGAAGTTCCGTTGTATCCTCATGACGCTACTTACGTGGTGTCTAGCCTCACGCGCAACGTTTACCAGTAACAGAGTTACCTATGGCCAGAAGTTCCGTTGTATCCTCATGACGCTACTTACGTGGTGTCTAGCCTCACGCGCAACGTTTACCAGTAACAGAGTTACCTATGGCCAGAAGTTCCGTTGTATCCTCATGACGCTACTTACGTGGTGTCTAGCCTCACGTGCAACGTTTACCAGTAACAGAGTTACCTATGGCCAGAAGTTCCGTTGTATCCTCATGACGCTACTTACGTGGTGTCTAGCCTCACGCGCAACGTTTACCAGTAACAGAGTTACCTATGGCCAGAAGTTCCGTTGTATCCTCATGACGCTACTTACGTGGTGTCTAGCCTCACGCGCAACGTTTACCAGTAACAGAGTTACCTATGGCCAGAAGTTCCGTTGTATCCTCATGACGCTACTTACGTGGTGTCTAGCCTCACGTGCAACGTTTACCAGTAACAGAGTTACCTCTTGA
Protein Sequence: MTLLTWCLASRATFTSNRVTYGQKFRCILMTLLTWCLASRATFTSNRVTYGQKFRCILMTLLTWCLASRATFTSNRVTYGQKFRCILMTLLTWCLASRATFTSNRVTYGQKFRCILMTLLTWCLASRATFTSNRVTYGQKFRCILMTLLTWCLASRATFTSNRVTYGQKFRCILMTLLTWCLASRATFTSNRVTYGQKFRCILMTLLTWCLASRATFTSNRVTYGQKFRCILMTLLTWCLASRATFTSNRVTYGQKFRCILMTLLTWCLASRATFTSNRVTS

Sequence clustering based on sequence similarity using MMseqs2