Amod016072.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- bab1
- Assembly
- GCA_963675035.1
- Location
- OY776111.1:188183795-188193512[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-06 0.00097 21.4 0.0 5 42 288 326 284 327 0.92 2 2 2.6 2.2e+03 1.1 0.0 24 41 333 350 331 351 0.85
Sequence Information
- Coding Sequence
- ATGTACAGGATGCTATCGCACTATGTCGTCCACTGGGCCGGGTATCAAGCTCACCTGCAGTCTGCCTGCTGCGATCAGTTCCTGTCTGAGAAGTTTGTCGATGTCACATTGGCAGTCGATGCTGGGCTGATAAAGTGTCACCGTGTCATACTAAGTGCTGCGAGTGGGTATTTCCATCAACTTCTGTCTCAGCATGACTCTCCACACCCAATCATCTTCATGAGAGACATGCAATACTGGGAGCTGATTGCCCTGGTGGACTTCATGTACCGAGGGGAGGTGACAGTGGAGGCAGACAGGCTTGAACAGCTGATGTGGTCTGCCAGTCAGCTGCAGATCCATGGACTGGCAGCATGCCTCAAGGCATGTCTTCAGCGCAAGAGTGGCAACACCACTCAACCAGACATACCTTCCATAGCTGCAGAAAACGAACAGatAGTAACAGAAGGAGAAGGAGAAATCGAAGATGATTCCCAAGAAAGTGGAGACATTGGAGATACTGGTATACCTCCTTCACTCAGCAAATTGTGTGAGCTGAACTGTGAACTGGAACTTCGACCCATAACACCTTCAACTTCTGGGAACATGATACCTTCCAGAGCTGGTGGCAAAGGCAAAAGGGGGAACCTTCCCCTTCCTCCTCTACAAGCCCTCAACACGGAAACTGTGCCTATTTCACAGAAGGAGGAATTGCCAACACCATCAACTTCAGATCCCCAAAAGCCTGACAGCAGCTTTAGACAGTTTCTACTGCTGAGCCCCATGCAGGGGCAATCTCAAGACAGCACCCAGACACGAACAGATTACAATAAAATGACCCTGCATGATGCACCCCTCTACAAACGCTACTCCCCACGTGTGTTGGAACAGGCTCTTCGAGACTTACAATCTGGAAGGTTTAGGAGTATCCGGGCATGTGCCAGACATCACGGGATACCGATGACCACCTTGCGCTACCGGGCCAAAGGCAAGACCCAGCGGCCTGCCTGGCTGGGGCAACACTATGGGAAACCGGTGACCACCCTGCGCTACTGGGCCAAAGGCAAGACTCAGGGGCCCACCTGGCTGGGGTAG
- Protein Sequence
- MYRMLSHYVVHWAGYQAHLQSACCDQFLSEKFVDVTLAVDAGLIKCHRVILSAASGYFHQLLSQHDSPHPIIFMRDMQYWELIALVDFMYRGEVTVEADRLEQLMWSASQLQIHGLAACLKACLQRKSGNTTQPDIPSIAAENEQIVTEGEGEIEDDSQESGDIGDTGIPPSLSKLCELNCELELRPITPSTSGNMIPSRAGGKGKRGNLPLPPLQALNTETVPISQKEELPTPSTSDPQKPDSSFRQFLLLSPMQGQSQDSTQTRTDYNKMTLHDAPLYKRYSPRVLEQALRDLQSGRFRSIRACARHHGIPMTTLRYRAKGKTQRPAWLGQHYGKPVTTLRYWAKGKTQGPTWLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00052013;
- 90% Identity
- iTF_00052013;
- 80% Identity
- iTF_00052013;