Amod082657.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- -
- Assembly
- GCA_963675035.1
- Location
- OY776114.1:95215500-95218624[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-06 0.0031 19.8 0.1 1 37 36 71 36 77 0.92 2 2 0.14 1.2e+02 5.2 0.1 1 12 86 97 86 101 0.91
Sequence Information
- Coding Sequence
- ATGGTGGGAGACATGTTTGAGCCATATTATACTTTCTTCAAATCTAAATCTACCCTCCTAGGAGTTAGAACGTATCACAATGCTAGTGAACTCCTGTCTGTCCGCAGTGAGGACGCTCTGTCGGCCGCATTGGACGAGCTGGTGCAGGGCCGCAGCCTACTGGAGACTGCCAACATCCACCACATCCCACGGTCCACACTGTACGCGCGGGCCAGGAGCTACGGCATCACCCCAACCATCACACGACACGAGTACTCGGAGGAGAAGCTGGCCGCTGCCGTGGAAATGGTCAAAGCAAACAGCCCCACACCCTCACAAACACATCTTACCAACACATCAGACGATGAACCATCATTCCACGGATTCGATTTGATGATGGATATCGAAGTCGGACAGAATAACCTACGTCAATTCACTGGCGCGCAATCAACCGACAAACTGCGCCATGTCGTCTCTCGAGCCCGCCGCTATGCCAACGGAGCAGTAGCCAATCACAGCCCAGGAACGTGA
- Protein Sequence
- MVGDMFEPYYTFFKSKSTLLGVRTYHNASELLSVRSEDALSAALDELVQGRSLLETANIHHIPRSTLYARARSYGITPTITRHEYSEEKLAAAVEMVKANSPTPSQTHLTNTSDDEPSFHGFDLMMDIEVGQNNLRQFTGAQSTDKLRHVVSRARRYANGAVANHSPGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -