Basic Information

Gene Symbol
-
Assembly
GCA_963675035.1
Location
OY776111.1:85664084-85665549[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.6e-08 2.1e-05 26.7 0.0 1 37 15 52 15 58 0.88
2 2 7.2 5.9e+03 -0.3 0.1 14 23 180 188 167 190 0.68

Sequence Information

Coding Sequence
ATGATATCAAAATATGAGACGAAGAGTCAGCAGCAGTCATGGGACCCCGCAGCGATGCAAAGAGCAATCGATGCCGTCAAGAAAGACGGAATGCCTTATTTAACGGCTGCTAAAACTTACAATGTCCCTAGGAACACACTAAAACGTCGTGTACTAAATAAAAATCAAGACGCCACTTACAATAAAAAAGTATCAGGCCATTTTCGAGCTGTTTTCAACGAAGACCAAGAACAGCAGCTGGTAAATTATCTCTTGGATATGGAGTTTGCACCCCCTCCTCACTGCAGTCATAAGCTGCAGCCACTCGACGTTTCATTCATGGGACCTTTCAATACTTATTGTGTCCAAGCGATTGAAAGATTCTTGCGTAATAATCCTGGTAGACTAGGGACACAGTATCAGGTGTCTAAACTTCTTGGAGAGGCATTTCCCCTTGCAGCTACTCCAACTATTGCGGTAAAGGGGTTTGGAAAATGTGGCATAGTTCCAATAAACAGACAGAAGTTTACTGAAGCGGATTTTGCTGCAGCCATGACCACAGAAATCTCTGTGCAACAAGCTTCTACCTCTCTTCAAGAAGCTGAAAATCATGAATTAGAGGTCGAAGACCAACAGGAAACTTCTACTGTGGTGCCAGGAAAAGAGTTTGCAGATTCGCAACACAAGATTGCTCGACGTCAAGAGACACCACCTGCAAGTAAAGAGAACTCGCCTTCTGGAGAGATTGATTGCCGACCAGCAACCTCTGCATCCATCCAACGCTGCAGTTCCATTGTTTTCCAATGA
Protein Sequence
MISKYETKSQQQSWDPAAMQRAIDAVKKDGMPYLTAAKTYNVPRNTLKRRVLNKNQDATYNKKVSGHFRAVFNEDQEQQLVNYLLDMEFAPPPHCSHKLQPLDVSFMGPFNTYCVQAIERFLRNNPGRLGTQYQVSKLLGEAFPLAATPTIAVKGFGKCGIVPINRQKFTEADFAAAMTTEISVQQASTSLQEAENHELEVEDQQETSTVVPGKEFADSQHKIARRQETPPASKENSPSGEIDCRPATSASIQRCSSIVFQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-