Amod006780.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- -
- Assembly
- GCA_963675035.1
- Location
- OY776111.1:63449861-63453459[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-09 3.7e-06 29.2 0.1 3 44 20 61 18 62 0.92 2 2 7.5e-06 0.0062 18.9 0.0 3 36 368 401 366 410 0.87
Sequence Information
- Coding Sequence
- ATGCCAACACGTTACAAAAGGAAGCCTGGTGTTAAACCACGAGGAAAGTGGACCATCGAACAACTAAATGAGGCCATAACTAGATACCAAGCCGGAGAAATAGGGTTGAGGGAGGCCGAACGCTATTATGGTGTCCCTGCTAGAACCATAAAAAGGCGAATAGCATCAAACAATACTACGTCAACTTCACTTGGGCCATCTTGCATTCTTGGGCCCGAAAATGAAGAGCGGCTTGTGAAACATATCAACAGGCTGTGTGATGCTGGATTCTGTCCTGATAGAACTACTGTTAGACGTTTGGCATTCGAGTTCGCTGAAGCGTTGAAGATAGACCACCGTTTTAACAGAGAAACAAAACTTGCAGGATATGATTGGCTTTGGTCATTCCTTAGAAGAAACCCTACTTTAACCATTCGAAAAGCAGAAGGACTTTCTATGGCTAGAGGTATGGGGCTGACCAGAGAGGCAACAAccaagttttatgacattttagaaAAGGAGCTTAAAGAATACCAACTCGAGAAAAAGCCCCAAAATATATTCAATGTCGATGAATCAGGAGTTCAACTGATCAACAAAGTTGGGCATGTGGTAGCAAAAAAAGGTGCCAAGGTTGTCCATAAAATTACAACAGCGGAAAAGGGTGAAACCGTTAGTATGGTTGTTTGCTGCTCAGCTGAGGGCAGATTTCTACCACCAGTTATCATATTGAAAGGCAAAAATTTAAAAGCTGAATTTCGAGACGGTCTGCCTCCTGGATCAAACGTGTTTATGAATCCAAAATCTGCGTACATAAACACTGACCTCTTTTACAACTGGTTTAAGGACATTTTCATTCCCAGAAAGGCTCcgggaagaaatattttaatccTGGACGGTCATTGCTCACACGTGTCTTCCATCGCTCTTTTAGAGCTTGCCGACGAGAATGACATCTCACTGATTTGCCTTCCGCCACACACAACCCACGCTTTGCAGCCTCTCGATAAATCTTTCTTTGCCCCTTTTAAGGCCTACTTTAAAACTGAGAGCAACACTTGGGTAGAACAAAATATTGGAGAAGACTTACTAGATATCAGGCCTTACGGAAACTATTCGTCAGAAACTTTAGAAGAATGTTTAAGAGCAATCCGATCCAAGGAGATAACACAGCGTGCAGCTGAGAAGAAGTTTGGAATTCCACGAGCAACAATTAAAAACAAGCTAGCTGGTAAACACTCTAAAGCAAGAGGAGGTTGTACGACGTTCACAGCAGAAGAGGAGCTAACATTTAAGGAACATCTTGTGCGGTTAAGTGACTTTGGATTTCCTGTAACTGAACTTGATTTTCGTTTAACTGTAAAAGAATACCTCGATAAAAAAGGGACCAAAATTGCAAAGTTTAAAGACAATTTGCCAGGCTATGACTGGGCTAAAGCATTTTTGAAACGACACCCTGATCTGTCAACCTGA
- Protein Sequence
- MPTRYKRKPGVKPRGKWTIEQLNEAITRYQAGEIGLREAERYYGVPARTIKRRIASNNTTSTSLGPSCILGPENEERLVKHINRLCDAGFCPDRTTVRRLAFEFAEALKIDHRFNRETKLAGYDWLWSFLRRNPTLTIRKAEGLSMARGMGLTREATTKFYDILEKELKEYQLEKKPQNIFNVDESGVQLINKVGHVVAKKGAKVVHKITTAEKGETVSMVVCCSAEGRFLPPVIILKGKNLKAEFRDGLPPGSNVFMNPKSAYINTDLFYNWFKDIFIPRKAPGRNILILDGHCSHVSSIALLELADENDISLICLPPHTTHALQPLDKSFFAPFKAYFKTESNTWVEQNIGEDLLDIRPYGNYSSETLEECLRAIRSKEITQRAAEKKFGIPRATIKNKLAGKHSKARGGCTTFTAEEELTFKEHLVRLSDFGFPVTELDFRLTVKEYLDKKGTKIAKFKDNLPGYDWAKAFLKRHPDLST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -