Amod066013.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- -
- Assembly
- GCA_963675035.1
- Location
- OY776113.1:27392417-27393893[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.32 2.7e+02 4.0 0.0 22 36 42 56 40 61 0.90 2 11 0.33 2.7e+02 4.0 0.0 22 36 78 92 76 96 0.90 3 11 0.33 2.7e+02 4.0 0.0 22 36 114 128 112 132 0.90 4 11 0.33 2.7e+02 4.0 0.0 22 36 150 164 148 168 0.90 5 11 0.34 2.8e+02 4.0 0.0 22 36 186 200 185 204 0.89 6 11 0.31 2.6e+02 4.1 0.0 22 36 222 236 220 242 0.90 7 11 0.32 2.7e+02 4.0 0.0 22 36 270 284 268 289 0.90 8 11 0.33 2.7e+02 4.0 0.0 22 36 306 320 304 324 0.90 9 11 0.33 2.7e+02 4.0 0.0 22 36 342 356 340 360 0.90 10 11 0.33 2.7e+02 4.0 0.0 22 36 378 392 376 396 0.90 11 11 0.34 2.8e+02 4.0 0.0 22 36 414 428 413 432 0.89
Sequence Information
- Coding Sequence
- ATGTCCCCGCGCCTGGAAACATACACAGTGCACTACATTCTGCGAACACTACAGTCTTGCTGGTCATTGCCTCTGGAGCAATGTCCCCGCGCCTGGAAACATACACAGTACACTACATTCTGTGCCGGTGAACACTACAATCTGAGCAGGCGAACACTACAGTCTTGCTGGTCATTGCCTCTGGAGCGATGTCCCCGCGCCTGGAAACATACACAGTGCACTACATTCTGTGCCGGTGAACACTACAATCTGAGCAGGCGAACACTACAGTCTTGCTGGTCATTGCCTCTGGAGCAATGTCCCCGCGCCTGGAAACATACACAGTGCACTACATTCTGTGCCGGTGAACACTACAATCTGAGCAGGCGAACACTACAGTCTTGCTGGTCATTGCCTCTGGAGCAATGTCCCCGCGCCTGGAAACATACACAGTGCACTACATTCTGTGCCGGTGAACACTACAATCTGAGCAGGCGAACACTACAGTCTTGCTGGTCATTGCCTCTGGAGCAATGTCCCCGCGCCTGGAAACATACACAGTACACTACATTCTGTGCCGGTGAACACTACAATCTGAGCAGGCGAACACTACAGTCTTGCTGGTCATTGCCTCTGGAGCAATGTCCCCGCGCCTGGAAACATACACAGTGCACTACATTCTGTGCCGGTGAACACTACAATCTGAGCAGGCGAACACTACAGTCTTGCTGGTCATTGCCTCTGGAGCGAACACTACAGTCTTGCTGGTCATTGCCTCTGGAGCAATGTCCCCGCGCCTGGAAACATACACAGTACACTACATTCTGTGCCGGTGAACACTACAATCTGAGCAGGCGAACACTACAGTCTTGCTGGTCATTGCCTCTGGAGCGATGTCCCCGCGCCTGGAAACATACACAGTGCACTACATTCTGTGCCGGTGAACACTACAATCTGAGCAGGCGAACACTACAGTCTTGCTGGTCATTGCCTCTGGAGCAATGTCCCCGCGCCTGGAAACATACACAGTGCACTACATTCTGTGCCGGTGAACACTACAATCTGAGCAGGCGAACACTACAGTCTTGCTGGTCATTGCCTCTGGAGCAATGTCCCCGCGCCTGGAAACATACACAGTGCACTACATTCTGTGCCGGTGAACACTACAATCTGAGCAGGCGAACACTACAGTCTTGCTGGTCATTGCCTCTGGAGCAATGTCCCCGCGCCTGGAAACATACACAGTACACTACATTCTGTGCCGGTGAACACTACAATCTGAGCAGGCGAACACTACAGTCTTGCTGGTCATTGCCTCTGGAGCAATGTCCCCGCGCCTGGAAACATACACAGTACACTACATTCTGTGCCGGTGAACACTACAATCTGAGCAGGTGA
- Protein Sequence
- MSPRLETYTVHYILRTLQSCWSLPLEQCPRAWKHTQYTTFCAGEHYNLSRRTLQSCWSLPLERCPRAWKHTQCTTFCAGEHYNLSRRTLQSCWSLPLEQCPRAWKHTQCTTFCAGEHYNLSRRTLQSCWSLPLEQCPRAWKHTQCTTFCAGEHYNLSRRTLQSCWSLPLEQCPRAWKHTQYTTFCAGEHYNLSRRTLQSCWSLPLEQCPRAWKHTQCTTFCAGEHYNLSRRTLQSCWSLPLERTLQSCWSLPLEQCPRAWKHTQYTTFCAGEHYNLSRRTLQSCWSLPLERCPRAWKHTQCTTFCAGEHYNLSRRTLQSCWSLPLEQCPRAWKHTQCTTFCAGEHYNLSRRTLQSCWSLPLEQCPRAWKHTQCTTFCAGEHYNLSRRTLQSCWSLPLEQCPRAWKHTQYTTFCAGEHYNLSRRTLQSCWSLPLEQCPRAWKHTQYTTFCAGEHYNLSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -