Amod082658.1
Basic Information
- Insect
- Allygus modestus
- Gene Symbol
- -
- Assembly
- GCA_963675035.1
- Location
- OY776114.1:95222914-95242134[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.4e-06 0.002 20.4 0.0 17 39 8 30 3 33 0.88 2 3 0.0049 4 9.9 0.0 19 39 65 85 53 90 0.75 3 3 2.4e-09 2e-06 30.1 0.3 5 41 112 148 111 152 0.90
Sequence Information
- Coding Sequence
- ATGCTTGTGTTGACAGCTGGGGCTAGCCTACAGTCAGCATCTGTCATGTATGGCATCCCCAAGACCGTGCTTTGGCGAAGGGTACAGAAGGACATCGGCTGCTACGCCTTGAGCCGCAGAGCCAAACTGCGCCAGAGATATCTCCCTCACGCCAAGGAGGCTGCTGTCAGAGCGCTCGAAAATGGcgaaaaaataaacaaagttgCTTCCATGTACAAGATACCAAAGACGACACTGTTCAGAGAGAAGAGCCGGCTTGTGGAGGCGGGCAAGCTGCCGTCGTCTTGTCTCAACAGACGAGAGCCCAACAATGACAGCTACAAGCAGCTGCGTCTCACACAGGCTGTGGCCGCTTGTAAGGAAGGCCGCATGTCACAGGCCGCTGCTTCCAGCACGTTCAAGGTTTCAAAAACAACTATATGGAGAAGACTGCAGCAAGGCAGAGGaagaaaacaaattcaatttgtACAGTCAAAAAGTGAACCAGTGGAAAGAAGTGTTAAGTTTGAAGAGATGGTTTCCGAGATACCGGTGACTTACGCAGAAGAAAACCCTTATGCAGAAGCCTCCTTCATCATTCTGGCGCCAAACAATGAGATCCCTGCAGGTTACGAGACGACAGAGCAGGTGGTCGTGGACAGTGTGTTGATGGCGGACAGTGTGGAGGATGTGGGAGAGGTTATAGAAATAAAAGAGACACCTACATATGTAGAGGACTTGGCCACCAGTCAGACTGAAACGTGTTCGTGA
- Protein Sequence
- MLVLTAGASLQSASVMYGIPKTVLWRRVQKDIGCYALSRRAKLRQRYLPHAKEAAVRALENGEKINKVASMYKIPKTTLFREKSRLVEAGKLPSSCLNRREPNNDSYKQLRLTQAVAACKEGRMSQAAASSTFKVSKTTIWRRLQQGRGRKQIQFVQSKSEPVERSVKFEEMVSEIPVTYAEENPYAEASFIILAPNNEIPAGYETTEQVVVDSVLMADSVEDVGEVIEIKETPTYVEDLATSQTETCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -