Apic004463.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Alloplasta piceator
Gene Symbol
PRDM1
Assembly
GCA_946863875.1
Location
OX333072.1:2493984-2506239[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 2.2e-05 0.0029 18.7 2.5 1 23 806 828 806 828 0.99
2 5 6.6e-06 0.00086 20.3 5.1 1 23 834 856 834 856 0.98
3 5 1.3e-06 0.00017 22.5 4.2 1 23 862 884 862 884 0.98
4 5 0.00087 0.11 13.6 1.5 1 23 890 912 890 912 0.97
5 5 5.8e-05 0.0076 17.3 0.2 1 22 918 939 918 939 0.96

Sequence Information

Coding Sequence
ATGGAGGCCAGCGAATGGGATCACGCGACCTTGAGGGAAGAAGAATTCGAGCAACATGCGGTTTATTTGGTACCGGACGTATCGGCATCGCCGAACGATGCGAATCGTGCCGAAGGTTCTTTACCGAGGAATCTCGTACTCAAGCCTTCACAAGCGCTCGATGACATGTTGGGCGTTTGGAGCACAAGTTACATTCCCAAGGGAACGCGTTTTGGTCCTCTTGTCGGTCAGGTCTACACCAAAGATTCCGTTCCGGCTGACGCAAATCGAAAGTACTTTTGGAGGGTTTACAAGAACAACGAATTGTTCTACTACATCGACGGTTACGACGTACAAAAATCAAATTGGATGAGATACGTTAATCCGGCTTATTCGTCGGAGTCCCAAAATCTCATCGCCTGTCAATACAAGATGAACATTTATTTTTACACGATCAAACCGATCCTGCCGAATCAAGAACTACTCGTCTGGTATTGCCGGGAATTTGCCGAGAGGCTCAAATATCCATTGACCGGTGAACTTATGCTTCAGCGAATACGACAACATTTTCAACAGTCAACATTGTCACCGGAAGTGGCTGGGTCGGTGGAGGTGGCGGTCACGAGCACCCCATTGAAGGACTCCACCATGTACGAGAGACGTTGTCAGATGACACCGACCGAGGGTTCGGTTCGATCCGACGAGGGTTACTATTCCAACGGTTATCACGACGAAATATTGACCCCGCCCGAGGAGAGCAGCGAGTCCGATTCCGAGAACAATTATGTCCTTGATTTTAGTAAAAACACACGCTCCGGTGGTGGTAATTCCGTCGTCGGCAACGGTGCGCCAACGACGGAATTACGAAACAAGCAGCAGGAGAGCACCAGCGTTCTCGTGGTAAAAAACGAGTACAGAAAAGTCAAGATAAAGATACCGAAGAATTACGTAAATTTTCAAAAAGTTCATCACGAAACGAGAGAGAAGGATGAATCGTCGATGAGTGGAAGCGGCTGTGGAGGCGGTACTATGCCAGAAATAGTGCTAAAATCGTCACCATCGCCTCTTCTCAAGCAAACCGTGATATCAACGTCAAACGAGGACGACAGAGAGAACGAAAAGATGGTGAAGCCTTTCTACGAGTCCGAGGCCAAAGTACCCTTGAATTCAAGAACCTCCTACATCGGTAGTCCAAGCAGTTCCATACTGGAGAACATATTGTTGAGGACCAGCACCATCACCGACAGCAACAACAACAACAGCAATAGCAGTGGCGGCGTTGGCAATTTGGCTCCGTCGAATTCCAGCAATCCCAGTAACGCCAATAACGCGAATAATCCTCATCAGAGTCACAATCATGGATTGTACGCTGGTAACATGGACGCCGTCACACCTCCGCCGTCCAGTCCAACGGAAATGGCGTATTCCTACAAAAAATCCCAGAGATACGGCAACATATTGCCCTGCAGTCCGGATTCGAGTTCAAACATGCCGATTCACAACAGCGAGACTACCTTCAACTCGAGCGTTAATCACGTTAACTCGACGAGCACAGCGATGCTCCAGAGTCCGGGAAATCTCGATTCGACGACAACGATCATCCACAATTGCTGCAGTTCGAACGGAATAAATTCCAGCATGACGATAACATCGTTGGCATCGTCGACGAATCAGTCGAATCCAACTCACTTGACGAATCCAACGTCCAGCGGTATCTATCAATCGACGAATAATCTTGTGATGAAATCACTAAAGTGCGCCAGTCCATTGCCAGGCGGTTCCGTTACAACTACGTGTAACTCGAGCAGCACCTCGACCACCAGCATTACAACCTCGATATCATCGCCGAACAATGGAACAACGACGATTCTCTATTCCAGCACGAATCCAATGTCGCAATTGCAATGTAGCGTTGAATCAAAGACTATTTATATCGGCAACAGCAGTAGCAACAGCAACAACAACAACAACAACAACGGGGGTTCATCACCGATATCGCCTGTGCACTCGCCAAATTCCTATCCGTATGGGCTTTATCATCCAAATGGAACGATGCATCAGCCATTGTCTATAAATTGCGGCTATTCGCCGACCCCGTCCGTTGGAATTTACGATAGAACGGATCCTAGAAGAAACGACAATCAGCTTCATCATCAATTGCCAACATCGTCGACGACGATGCAGATCGACGGTTGCCAATCGACGAATCTCATCGCCGGTACTCACAATCTTCATCTTGGTCATCATCCCGGTCTCACGATACACCCAAATTCATCGGGTTGCtcctcgatgagtcgatattcaccggcgagctccttgtccccggacgatcgggcttgctcgcagagtgcaggctcgttgagtccaaattcacagggctcaaggggctacagatctctgccttatcccctgaaaaagaaagacggcaagatgcattacgagtgcaatgtctgctgcaaaacgtttggacaattgtcgaatctgaaggttcatctgagaactcactcgggcgagagacccttcaagtgtaacgtttgcacaaagagctttacgcaattggctcatctgcagaaacatcatctcgttcatacgggtgaaaaacctcatcagtgtgaaatatgcaaaaagcggttcagctcaacgtccaatttgaagacacatctgagacttcactcgggtcaaaagccctacgcatgtgacttgtgtccggccaaattcacgcaatttgttcatctcaagctgcataagagactgcacaccaacgagaggccttacacgtgtcagggttgcgacaaaaagtacataagcgcgagcggcctcagaacacattggaaaacgacgagctgtcgaccgaacaacatagaggacgaacttgttctcgctgccgccgcGGTTGGTTCCCCGAGTTATTACACCGAGTACGGATCCACTGACATCGACGTTGCAAACATCCAGAAGGAATGCGACCTGGAGCAGCATATGGAAAATTATGAGAGACGCGGTATCGGAAGTCTCGGTGGTGGTCTCGGTGGCGGTGGAGGCGGCGTCGGCGGCGGCGGCGGCGGCGGTGGTGCGAGTCTTCACGGTCCGCATTCAACGACGTCACTTCACAATCTTGACAGTGGGGTCGGTCGACCGAGTGTCATAGAATCGTCCCAGCCTCACATTATTGAGTGTACATAA
Protein Sequence
MEASEWDHATLREEEFEQHAVYLVPDVSASPNDANRAEGSLPRNLVLKPSQALDDMLGVWSTSYIPKGTRFGPLVGQVYTKDSVPADANRKYFWRVYKNNELFYYIDGYDVQKSNWMRYVNPAYSSESQNLIACQYKMNIYFYTIKPILPNQELLVWYCREFAERLKYPLTGELMLQRIRQHFQQSTLSPEVAGSVEVAVTSTPLKDSTMYERRCQMTPTEGSVRSDEGYYSNGYHDEILTPPEESSESDSENNYVLDFSKNTRSGGGNSVVGNGAPTTELRNKQQESTSVLVVKNEYRKVKIKIPKNYVNFQKVHHETREKDESSMSGSGCGGGTMPEIVLKSSPSPLLKQTVISTSNEDDRENEKMVKPFYESEAKVPLNSRTSYIGSPSSSILENILLRTSTITDSNNNNSNSSGGVGNLAPSNSSNPSNANNANNPHQSHNHGLYAGNMDAVTPPPSSPTEMAYSYKKSQRYGNILPCSPDSSSNMPIHNSETTFNSSVNHVNSTSTAMLQSPGNLDSTTTIIHNCCSSNGINSSMTITSLASSTNQSNPTHLTNPTSSGIYQSTNNLVMKSLKCASPLPGGSVTTTCNSSSTSTTSITTSISSPNNGTTTILYSSTNPMSQLQCSVESKTIYIGNSSSNSNNNNNNNGGSSPISPVHSPNSYPYGLYHPNGTMHQPLSINCGYSPTPSVGIYDRTDPRRNDNQLHHQLPTSSTTMQIDGCQSTNLIAGTHNLHLGHHPGLTIHPNSSGCSSMSRYSPASSLSPDDRACSQSAGSLSPNSQGSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCEICKKRFSSTSNLKTHLRLHSGQKPYACDLCPAKFTQFVHLKLHKRLHTNERPYTCQGCDKKYISASGLRTHWKTTSCRPNNIEDELVLAAAAVGSPSYYTEYGSTDIDVANIQKECDLEQHMENYERRGIGSLGGGLGGGGGGVGGGGGGGGASLHGPHSTTSLHNLDSGVGRPSVIESSQPHIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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