Basic Information

Insect: Alloplasta piceator
Gene Symbol: prdm10
Assembly: GCA_946863875.1
Location: OX333077.1:19497716-19509831[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0081 1.1 10.6 0.6 2 23 482 503 481 503 0.95

2 14 4.3e-08 5.6e-06 27.2 1.3 1 23 537 559 537 559 0.98

3 14 0.044 5.8 8.3 4.4 1 23 567 590 567 590 0.98

4 14 0.039 5.1 8.4 0.1 2 23 608 629 607 629 0.94

5 14 0.00037 0.049 14.8 0.2 2 23 643 664 643 664 0.97

6 14 0.058 7.6 7.9 5.9 1 23 681 703 681 703 0.91

7 14 0.011 1.4 10.2 2.0 2 23 712 733 711 733 0.96

8 14 0.0068 0.89 10.8 0.1 1 23 740 762 740 762 0.98

9 14 0.00022 0.029 15.5 1.4 1 23 769 791 769 792 0.95

10 14 0.075 9.9 7.5 2.4 1 23 797 819 797 819 0.98

11 14 0.00021 0.028 15.6 4.4 1 23 825 848 825 848 0.96

12 14 0.0017 0.23 12.7 1.7 1 23 881 904 881 904 0.97

13 14 0.00013 0.018 16.2 2.0 1 23 926 949 926 949 0.95

14 14 0.0039 0.51 11.6 3.4 3 23 987 1008 987 1008 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0081	1.1	10.6	0.6	2	23	482	503	481	503	0.95
2	14	4.3e-08	5.6e-06	27.2	1.3	1	23	537	559	537	559	0.98
3	14	0.044	5.8	8.3	4.4	1	23	567	590	567	590	0.98
4	14	0.039	5.1	8.4	0.1	2	23	608	629	607	629	0.94
5	14	0.00037	0.049	14.8	0.2	2	23	643	664	643	664	0.97
6	14	0.058	7.6	7.9	5.9	1	23	681	703	681	703	0.91
7	14	0.011	1.4	10.2	2.0	2	23	712	733	711	733	0.96
8	14	0.0068	0.89	10.8	0.1	1	23	740	762	740	762	0.98
9	14	0.00022	0.029	15.5	1.4	1	23	769	791	769	792	0.95
10	14	0.075	9.9	7.5	2.4	1	23	797	819	797	819	0.98
11	14	0.00021	0.028	15.6	4.4	1	23	825	848	825	848	0.96
12	14	0.0017	0.23	12.7	1.7	1	23	881	904	881	904	0.97
13	14	0.00013	0.018	16.2	2.0	1	23	926	949	926	949	0.95
14	14	0.0039	0.51	11.6	3.4	3	23	987	1008	987	1008	0.98

Sequence Information

Coding Sequence: ATGGATTTGAGGGGCCCTCCCGAGGGGGCCCCTGGCGATTCTTTGGAGATGCCGATTATTGACAAATCCACAGAAATATCGGACAATTGGACAAATCCTCTTGCAGCCACAATAATCGGCGATAACATCAGAAAATCCAACAACAGATTACTCTTTTTTACCGTTGAATATGTAGAGGATCAATCGAGGGACAATTCGAGAATGTTTCCCGCTTACGAGCAAGTTTCGTTCTCCCCAAGAGCTCCGTCGCCACTCTCCGATTTTGGAGACCGAGTCAGTCCTCTTGATCCTAATATGAGCTCGGCAGCTAGATATTCACCTACTCCCGTCCCCCTTCCGCCGTTGCCTTTTCACAACTCCGTCGTCGTACTCCAAGGTCCTCCGTCACCCCTCATAGCTCAACCGGAGACCAATAATTCTACAAACATTGATTTTGTTCCTGGACAAAACAGAGAAGAATCCAGTGAACCAAGTGACAATGTCACTGATTTTGTAAATGGCGAAAACGACGAAGGCTTGGTCAGCGAAGTGGACGAAGAATTGATCCTGATGCAAGATGCAACACCGGAATTAGAATCTTCTACGGCACCTCTGATGTTGACCGGGATAACGGGTACGGAGTTTGCACTAACTAGAGATTTTCTCGTTATGCACGACGATCAAATAAATGTGATGAGCAGTCTGAGAAATTCTGATATGACGAACGAGCCAGTTAACCCGTCTATCGATACGGTAGTGAGCAACGATATTCTCGTGCCCGTATCGATAAACGAAAATATTTCAAACGGCGACGGAGATACGACGAAAAATTTGCCCGACGAAAAGACCGAAACAGACAAGAGAATAGTCAGACGCTCAAGACGTCAGATAAATGACAAAAAAACATTATGGTGCGACGATTGTGACTCTATATTTCACAAAACGGGCGATTGCACATCGAAAAACGTTCGTACGATCGCCGATCAGCCAGTTCCATCGCGGGCAATCGCCACACTGCCAGGCTCTTACTTGTCGATCAACAAATTGTCAACAAACCTCGAGGCCGGTGAAACGAATTATGGAGTATTTGCCAAGCGTAACATACGTTCCCGTACACAATTCGGCCCTATCGAAGGAATTTTCTGTGCTTATTACGGCATTCCTTTTGAAAATTCTTTGCCATTGCTCTATGAAACTGAGAACGGCGAATTCATGAAGATCGATGTGTCTAACGAAAACGCTTCCAATTGGATGCGATTCGTGAGACCAGCCACGACCTACAAGGAACAAAATCTTGTAATATGCCAACAGGCCGACGGAATTGTATTTCTAACGACGAGAAATATATTACCGAAGGAGGAATTGAAAGCGGGGCCTAATCCTGATTACGCTATTCGTAGAAATCTAACGATTCTCGAGCCTGAAGTAAAAGACGACAGAGAACTAACCGATTCAAATGCATGGCCGTGTTTCGAGTGCAATCAGCGTTTTTTAACATCCGAGAAGCTTCAAAAGCACTTGACGATTCACGACAGTCCGAAGAACGCGAATAAATCGCGCATGAAGCGCAGAAAAATTGCCGTACCGACGAACAAACTCTTCAAGGTCGTGGATGGTCAAACATTGTTGTACACGTGTCCACACTGTCCAAAGGTTTTCCCAAGAAGTTACAGTCTCAAGAGACACCTATTGATACATCCAGGTGCAAAAGCACCGCGTTACGAGTGTCAATCGTGCGGTGAAAATTTTTTACATCCGCATAATCGCAGCCGACACATGAAAATGTTTCACGCCGATGGTGCGAAGGAGAAGGAAAATTCTCGTCAAAATTTCACCGATTGGAAGTGCACAACGTGCAATTTGATATTCGGAAAATCGGCTTTGTTGAGCATACACACGATCGCCCACACCGGAAACGGTATTATCGCCGATGAAAATTTTGACAATCGTTGTCCGCAATGCGACGAGGAATTTAAGACTCGCGGTGAATTGATCGGTCACGTTACCAAGCACGGACGCTTGCAATTGCCTAAAACAAAGAAAATCGCGCAATTGGCGTCGCACAAGTGCAAAATGTGTTACAAACGTTTCGCGACGAAAGTACGATTACAGCAGCATTGTTTGGTACACGGTGCCGAGGACCAAAAACCACTGCCATGCAACATTTGTTTGAAACGTTTTATGAACAACTCGGCGCTATCTTGTCACTTGAAGACACACAGGGCAGACAAACAGATATTCGAATGCCCGATGTGCAGAGAGTTATTCAATCAAGTATTGATGCTGAAAGATCATATCGAGACACATCGAAACGAGGATGGCACATTCAGCTGTCCACAGTGTCCCAGAACATTTGTGAAATATTCAGTTATTCGTAAACACATAAGAGCACATCACTGTGAACGGAAGCACAAGTGTCAATTTTGCGCAAATCGTTTTCCCACCGTTGACAAATTACGAATGCATCTGCTTCGACATTCCGATCATAGAGAATTTCATTGCGCCAATTGCGAGAAACAGTTCAAACGAAAAGACAAGCTCAAAGAGCACATGACGAGGATGCACAATTCTCAGAGAATCAAACGCGATCAAACAGCGCAGAACAATCAGATAAAAAAATTCGTCCCAAAGGTCAATCCGACGGATTACAATCGTTTCGTTTACAAGTGTCATCAATGTTTGGTCGGTTTCAAGAGACGAGGAATGCTCGTTAATCATTTGGCGAAAAGACATCCTGATGTTTCTCCGGAATCGGTGCCGGAATTGAATTTACCAATTTTGAGACAGACCCGTGATTATTACTGCCAATACTGCGACAAAGTCTACAAAAGCAGCAGCAAGAGAAAAGCTCACATTGTGAAGAATCATCCTGGCGCCGCTCTGCCACCGAGCAATCGTCACAAGGAAGCCGATTTGCCGGGATTGCCGAATTCAACGTTCAGCCAAACTGTCGGCAGTATAACGACGACGCCCCAGGGCTGTCAATGGTGTCACAAGCAATACGCCAGCAAGGCGAAACTGTTGCAGCATCAGAGAAAAAAACACTCGACGCTAATGGAGCCCGCTGATAAAGTACCGAGGGCGCGTAATCGACCACCTCGCGATCGTAACCAGACGTCGAATCTCGTCGATGGCTCTTTTCTCATGACCGATTACATTCAAACGTGCGAAATTTCGGCTGATTTTCTCAAATCACGAATAATCAAGATAACGGACGACGTCGATATTATGGGAAACGGTCTTGAATTGTCGGGACAGCAACAATTCGTACGGATGCGCGATATACGCTGA
Protein Sequence: MDLRGPPEGAPGDSLEMPIIDKSTEISDNWTNPLAATIIGDNIRKSNNRLLFFTVEYVEDQSRDNSRMFPAYEQVSFSPRAPSPLSDFGDRVSPLDPNMSSAARYSPTPVPLPPLPFHNSVVVLQGPPSPLIAQPETNNSTNIDFVPGQNREESSEPSDNVTDFVNGENDEGLVSEVDEELILMQDATPELESSTAPLMLTGITGTEFALTRDFLVMHDDQINVMSSLRNSDMTNEPVNPSIDTVVSNDILVPVSINENISNGDGDTTKNLPDEKTETDKRIVRRSRRQINDKKTLWCDDCDSIFHKTGDCTSKNVRTIADQPVPSRAIATLPGSYLSINKLSTNLEAGETNYGVFAKRNIRSRTQFGPIEGIFCAYYGIPFENSLPLLYETENGEFMKIDVSNENASNWMRFVRPATTYKEQNLVICQQADGIVFLTTRNILPKEELKAGPNPDYAIRRNLTILEPEVKDDRELTDSNAWPCFECNQRFLTSEKLQKHLTIHDSPKNANKSRMKRRKIAVPTNKLFKVVDGQTLLYTCPHCPKVFPRSYSLKRHLLIHPGAKAPRYECQSCGENFLHPHNRSRHMKMFHADGAKEKENSRQNFTDWKCTTCNLIFGKSALLSIHTIAHTGNGIIADENFDNRCPQCDEEFKTRGELIGHVTKHGRLQLPKTKKIAQLASHKCKMCYKRFATKVRLQQHCLVHGAEDQKPLPCNICLKRFMNNSALSCHLKTHRADKQIFECPMCRELFNQVLMLKDHIETHRNEDGTFSCPQCPRTFVKYSVIRKHIRAHHCERKHKCQFCANRFPTVDKLRMHLLRHSDHREFHCANCEKQFKRKDKLKEHMTRMHNSQRIKRDQTAQNNQIKKFVPKVNPTDYNRFVYKCHQCLVGFKRRGMLVNHLAKRHPDVSPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIVKNHPGAALPPSNRHKEADLPGLPNSTFSQTVGSITTTPQGCQWCHKQYASKAKLLQHQRKKHSTLMEPADKVPRARNRPPRDRNQTSNLVDGSFLMTDYIQTCEISADFLKSRIIKITDDVDIMGNGLELSGQQQFVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01057116;
90% Identity: -
80% Identity: -