Apic013460.1
Basic Information
- Insect
- Alloplasta piceator
- Gene Symbol
- -
- Assembly
- GCA_946863875.1
- Location
- OX333074.1:53590288-53594509[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00056 0.073 14.2 0.1 2 23 474 497 473 497 0.95 2 10 0.016 2.1 9.7 2.8 1 23 503 527 503 527 0.98 3 10 0.00038 0.05 14.8 0.2 1 23 533 557 533 557 0.94 4 10 0.00021 0.027 15.6 0.7 3 23 565 587 563 587 0.95 5 10 0.0029 0.38 12.0 4.3 1 21 594 616 594 618 0.96 6 10 0.01 1.4 10.2 0.5 3 23 627 649 625 649 0.90 7 10 3.8e-06 0.00049 21.1 2.5 1 23 655 679 655 679 0.98 8 10 8.7e-06 0.0011 19.9 0.7 1 23 685 709 685 709 0.97 9 10 0.00098 0.13 13.5 2.3 1 23 715 737 715 737 0.99 10 10 0.00019 0.025 15.7 0.1 1 23 809 834 809 834 0.92
Sequence Information
- Coding Sequence
- ATGTCTCGCAAAGTGTCCTCGACATTGTGCAAAACGAAACAGATACCGCGAATATTTCAACGTCGTAATAAAATTCAATGCGGCAGTTTAGCGCGCAACGTTTGGTGCTTCAACGACGCTCCGAGCGTCGATGACAATGCGCCGAATTTGTCGTCCTCGTTGAGCTTCAATGTTAATCATGAATCGAGCGACAGTGATAACAAACATTCGACGGAATACGATAAAACGAAAAAACGAGGGAGTGCGAATCGCGACTACGATAATTACGCAACGAGAACGTTCAAAGCCGTTCCTAACCTCACTTCCGACATTGTCGGAAGTGAGGTTAGGATCGCCAATGACGGGAGCGTCGAGAAAAATGCTGTTGTGAGCCCGGCGAGCGTCGAGGATATTGAAAAATGGCTGAAAACCCGTTCGGAATCAATATCGAGCATCGATCTCGACGCTATGAAATCGGGCGTTGAAGAGGAGGACGAGGAAGAGGTCGAAAACGTCGGCGTCGAACGTTATCTCGGGGACGATTTGCCACACTCGTTTCTCGTCAAGGATCACGACAGTCTCTCGATCGACATCGATCTCAATGACAAAAAGCTCAATCTCGATTATGATCCTCTGTTGCGCGATATTCACGCGGACAAATTGCTCGAGGTTTGCGAGAAAAACGATGATTTCATAATGCCGGAGTTTCGACTGGATCATTTGGATCCTTTGACTCTATCGCCGAGAGACATGATGGTTGCGGGTGAAATCTTACCCTCCACGAGTAAAATGGTCGTCAATGCGGAGAGGGAAATGTCAAGAGAAAAAGTCGTAGCCAATAACGAAAGTTCCATCGATTCCGAAATGACGGACAGACCTTTGCAATCGGACGTTTACGATTTAGCCGAGGAACTCGAAGAGAATATTCCCAATGACAAAAATGAAAAATTTTCAACGAGAGTTATGGAAAATTTGTGCGCCATTAAGACGGAAATAGACCCTGAACCCAGCTTGCCGATTTCTAAGGTCGAATGTAGGTCAAAAGGAAAGAGCAAATTAGAGCCGAGGATAATAAAAAAACGACGAAAGATAAGACCCAAAACTGAGAGAAACGAGATTACTTTTTTGAGCGAACCCTGCCATATTGACGGCAAAGACGGAGTTATGACGGTCGTCGCCATATCCACTGACAAAATTTCCAACATGACGCAAATTGTGATAAATACGGGTATGGATGAACAAATTTACCAGGGTAAAACTTCAGAACTCATCGAGGCTACTGGAAATTTTCCTAAAATGGCCAAGATCGAGGTTGACACAGATAATTTCGACGGACATAGCAGACCCCATGAAACAATGGTTTCAAAGGCTCTGGAAGAAATTGGCATTACGGACGAGACGCTTGGAGCTACGCTCATTGTGGAAAATGGAAAAACTTGGCAATGTCCCAGGGAGGATTGCAATCGAGAATTCACGAAGCTCAACGCTCTGAAAGCTCATTTGCTCGCACATTACGGAGTCCGACCTTTCAAGTGTGATTACGAGGGTTGCACGTGGGCCTTTCATTCGGAATTCAAGCTCAAGCGTCACAAGGACACGCACCTTAAGCGAAAGAATTTCGCATGTTCGGTGGAGGGCTGCGATCGTCGTTTCACAACGGTTTACAATCTCTGGAGTCACGAGAAATTGCACAATCGTCCAAATCGGATAATCTGCCATGTGCCCGATTGCAACGAAAAATTTCAGACGAAAAGAGCCCTGGAATTGCACATGAGAAATCACGATCAGAGTCACGCGCCTTACACGTGCAATCACGAAGGTTGCGGCAAGCGTTATTACACGAGTAACGCATTGACGTCGCATCAGCGTTGTCACAATTACAAGGAAATCGACGTGAAGTGCATGTGGCCAGGATGCGGTAAATTATTCGACAAACCTTGTCGTTTGAAGGCTCACGTTAGATCTCACACCGGATGTAAGCCTTACACGTGCACCTATCAGGACTGCCAATGGGCTTTCTCGTCGTCGAGCAAACTCAAGAGACACCAGAAAAAGCACACGAACGAGAGAAAATTCGTTTGCAACGTTGAGACTTGTGGGAAAGCATTTATGCGCTCGGAGCATCTCCGAGAGCATTTATTGACGCACGCTGGTGGCGGTTATTTTCAATGTTACATGTGCGAGGCGCATTTTTCGGCCAAAAGCAGTCTCTACGTTCACATAAAGAAGCATCAGGTCAAAGATGCGGTCGATACGATTATCGCGAACGATGAAAAATCAACGAGCAGAAAAAATCAAGATTCACTTGATTTTGTATCGAGCGGAAATGACGCTGCGAGGATGCAGGAATATATGGATTATTCGTTATTGACGACGAATCCGAAGAAAACAAATTCTCGGCGTAATCGCGAGGCGCGAAAAAACGTCGATAAAGAAGATTTCTCGTACAATTGCGGAATGGAGGATTGCGGTAAATCCTACGAGACACTTTCGAATCTCGGTTCTCATATGATTGCCATGCACGAAAATTCCATCGACGAGAAGAATAATATCGGTGTTAACGGGATCGAGGAAACTTCGGATTTGGATTATATCATGTATGCGACACCGACCAACAATTCTAATGATAATTGTCGAACTTTGATGCTCGAATCTTGCGACGTTGCGGCGATCAACGAAACTACGAAAAATTTGTCATCGACACCGGAACCGGAACCACCGCCGAATTTATCGAGAATTGGGGAAAATTTTCGATACAACGAGAAAAACGATTGTGCAAAAAAAAACAATCAAGGCTCGGCGAGAACCGGATTAACGTGCGACGATGTTTGGCGATTGAAGTCACGCTGCAGAAACACAGAATTGGGAATCGTCGGTGCATCGGACGTTGTTCTCGGAACCGCTAATTTAAACGAGGGTCTAATGCTCAACGAGGAATTACCGTCTATGTATTATCAGGACGATATCGTTGGCACCGAGTGCCAAATTTTGCTTCTTGATTCCGGAAATTCCGAACATCCGATCGATCTGCGCGGTCTCGAGTGA
- Protein Sequence
- MSRKVSSTLCKTKQIPRIFQRRNKIQCGSLARNVWCFNDAPSVDDNAPNLSSSLSFNVNHESSDSDNKHSTEYDKTKKRGSANRDYDNYATRTFKAVPNLTSDIVGSEVRIANDGSVEKNAVVSPASVEDIEKWLKTRSESISSIDLDAMKSGVEEEDEEEVENVGVERYLGDDLPHSFLVKDHDSLSIDIDLNDKKLNLDYDPLLRDIHADKLLEVCEKNDDFIMPEFRLDHLDPLTLSPRDMMVAGEILPSTSKMVVNAEREMSREKVVANNESSIDSEMTDRPLQSDVYDLAEELEENIPNDKNEKFSTRVMENLCAIKTEIDPEPSLPISKVECRSKGKSKLEPRIIKKRRKIRPKTERNEITFLSEPCHIDGKDGVMTVVAISTDKISNMTQIVINTGMDEQIYQGKTSELIEATGNFPKMAKIEVDTDNFDGHSRPHETMVSKALEEIGITDETLGATLIVENGKTWQCPREDCNREFTKLNALKAHLLAHYGVRPFKCDYEGCTWAFHSEFKLKRHKDTHLKRKNFACSVEGCDRRFTTVYNLWSHEKLHNRPNRIICHVPDCNEKFQTKRALELHMRNHDQSHAPYTCNHEGCGKRYYTSNALTSHQRCHNYKEIDVKCMWPGCGKLFDKPCRLKAHVRSHTGCKPYTCTYQDCQWAFSSSSKLKRHQKKHTNERKFVCNVETCGKAFMRSEHLREHLLTHAGGGYFQCYMCEAHFSAKSSLYVHIKKHQVKDAVDTIIANDEKSTSRKNQDSLDFVSSGNDAARMQEYMDYSLLTTNPKKTNSRRNREARKNVDKEDFSYNCGMEDCGKSYETLSNLGSHMIAMHENSIDEKNNIGVNGIEETSDLDYIMYATPTNNSNDNCRTLMLESCDVAAINETTKNLSSTPEPEPPPNLSRIGENFRYNEKNDCAKKNNQGSARTGLTCDDVWRLKSRCRNTELGIVGASDVVLGTANLNEGLMLNEELPSMYYQDDIVGTECQILLLDSGNSEHPIDLRGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -