Apic018222.1
Basic Information
- Insect
- Alloplasta piceator
- Gene Symbol
- -
- Assembly
- GCA_946863875.1
- Location
- OX333076.1:21070436-21074903[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00083 0.11 13.7 0.1 3 23 710 730 708 730 0.96 2 16 2 2.6e+02 3.0 1.0 1 23 762 784 762 784 0.96 3 16 0.00088 0.12 13.6 1.7 3 23 793 814 792 814 0.98 4 16 0.001 0.13 13.4 2.1 1 23 821 844 821 844 0.96 5 16 0.00042 0.055 14.6 1.9 1 23 850 873 850 874 0.92 6 16 0.13 17 6.8 0.1 3 23 882 901 881 901 0.96 7 16 1.5e-06 0.00019 22.4 2.2 3 23 908 928 906 928 0.96 8 16 1.5e-06 0.00019 22.4 0.3 1 23 934 956 934 956 0.99 9 16 0.0041 0.54 11.5 2.8 2 23 968 990 967 990 0.95 10 16 0.43 56 5.2 2.6 1 23 996 1019 996 1019 0.92 11 16 0.03 3.9 8.8 4.3 3 23 1042 1063 1040 1063 0.92 12 16 0.0019 0.24 12.6 1.2 2 23 1070 1092 1069 1092 0.96 13 16 3.8e-05 0.005 17.9 1.7 2 23 1100 1121 1099 1121 0.97 14 16 0.0032 0.42 11.9 3.3 1 23 1127 1150 1127 1150 0.96 15 16 0.31 40 5.6 3.2 2 23 1157 1178 1156 1178 0.96 16 16 0.48 63 5.0 1.9 1 23 1184 1206 1184 1206 0.95
Sequence Information
- Coding Sequence
- ATGATGGAAACGAGCGAACCAAGAGTCTTAAAGAATCACAGGATATTGGCATTGAAAACAATGAGTCTCGATAAGCCGAAAGCAACCTTGGAGAGACCTCGGGCATGGGTAAAGAATATAAACGAGTTGAAAAAAGTAACACCACGCGTGAAATTATTCACCCCGGAAGTTTCAAATATATTGGAATTAACGAGAAAAAGTGTGAGGAACATTGGTGAAATGAAAAATACGAAAAATGAGACGAAACGCGAACATTTCCAAAATTATTGTCGTACTTGCGCAGGTCTAAAAGTACCGCTGATTGATATATTCAGCGAAAGAGGAACGCAGATGCGTCTCGCGCAACAACTGAAACATTTGGAGGATATAAAACAGCATGACAATTTATCAACGCAAATGTGCATGGATTGCATATGCGATTTAAAAATGAGTTACAAATTTTTCATGCAAATCAAGAAGGCGCAGGTTAAATTGAGCTCCATGAATTCGTCATTGCAGATGATAAGCGGAAATGCTCAACGGCCAACGATATCCGAAGATGATGATAAATCATGCGCGGCAATGACAATTACACTGACCAACAATCCCGAAAAAACGACTTGCGCAGCGAAAAAATCAGAGAGCGAAAAAATCGAAGAATCGACGAATATAAGTCCGCCGAGAATAAATTACGACGACGGAGAAAGGAAAGAGCAAGACGACGCGAGGATCGACGATGGGTCACGGATAAAGATCGAGCCAGAGACGAGCGAGGATTACAGTTTGCATTATAGCGACGACAACGAATCGATCGAGGAATTCGATCCTGACGATCCGTCATTTCGATCAGACGTTAATGACATCATGGATCTTTCTCACGAGAAAAGTGCAGAAAGAACGAACAACCTCGATACCAAGATTGAAACACAGCATGTCGAGAATAATTCTGAAATTTCGACCGAGCCGCTCACTAAAACGGAGCAATCATGCGATTCGAACAAGAACGTTTATAAGTACGACGCAAAATTAAAGGCTTACGTGAAAGTCGAACTATTGGAGGGGCACGAAAGCAACAATATTACCGGAACGGCGAGTGAAAAAAGCACCCATGATCGTACGAAGGAAACAGTCAAACAGCCGAATATACTGAAGCGACAAGCTTCGAGTAACAAGCATTTTTTAGAGAAACCCGTGACACGTGTCGGAGGATCGGAAACGACGCTGGTCAGAACGGGCAAGCCAAAACTACTCCAAACGAAAAAGCCAAAATTGGACGTGGAGAATGCCTTAAATATAACGAACGAGAACGAAAATGGTATAATGTACGTTACTGTGAAAGGTACAAAGCCAAATGAATTGTTGCTGGTGAAAGTACGAAAGATGGACAAGCAAGCAGAGAAGGACGAAGAGCGTAAGAAGTCGTTGAAATTAGAGACAATAGAAATTGACAAGAAGCTGAAAAAGCTCGAAACCACGATCTCAACGAAGGAGAAGGAAATATCGGAAGAACGCGCGCGTGCAATCGACAAGAGGGAGCAAATAATCGAGGAACAGATCGAGGAATACAAAAAAAAACGCGAAAAGATATTGGGTGGTACTTCCGGTACACCGAATGCACTTAAATTTGAGGACGGTATGATAAGGTTTGTGAATCCAACGGAAAACAACGAGAATAAGAAAAGCGATGAGAGCGAAATAACAAAGGACGCGTCACAGGACGAAACAGCGGAAATACGTCACGTAGCTGATGAGGAAAAGAAAATCGAGGAGCAGTGCGGAGTAAAAACCAGAAACGAGGATGAGAATAAGTCGTGGATCAGCACGTGCGATTATCTCACGCGTTTGGCGCGTTTGAAGAGAAAATGGGAGTTCGCGAAGAGAAAAAAGGAAAATTTACAGCGCAATATTGGCAAAAGCACGAAATTGGATACCATGAAGAAATTGTATCGTATGTTGGGCAAGAGAGATAATAATCTCATTAGTCTTCAGGACTATTTGAAACAACGTAAAATCGTCGTGAGGCGTTTGAAGAACGAGGACATTGCAGCACTCTCGGAAGATCGTAACGGCTCAACAATTAAAAATTTGCCCGATCTAATTGACGAATCGCCACCGGACGACTACATACACCTCGAGAATTATCTCGATTGCGATTATTGTCCCGAGACATTTGCCTTTCGCGAGGCGCTCGAGGAACATCTCACGTCTCACGATTATAAGCTTATGTATTGGTGCGACGATTGTCGTTTGGAGTTTCCAACGATAAAATCCAAGCGCGTTCACAATGCCACTTGTGTGAAAAAATTCATCTGTCGTTATTGCAGTGCGGTGCTCGATTCAAAGGGTAAAAAGAGACAGCACGAGCAAAAACATGTTGACAGTATGCACGGTCAATTGTGCGAGGTTTGCGGCGAAAAATTCAAGCATCAAGCTACCCTGGATCAACATTTCAAAACGCAACATATGACATGGGAGAAGATCTATCAATGTCCAAAGTGTCCCAAGAAATTTGCCTTCAAGCAAAAATTGACGTTTCATCTTAAATCGGTGCACACGACGCTCAGGGCATATTTGTGCGAGGATTGCGGCGCTGATTTTAAAAATCCTGCTAGTCTGCGTCATCACCGAGTGAGAAAGCATCACCCGACGAGCAACAAACGTGCCTGTCCAGTTTGCAACAAAATCGTGCCTTTTTACAGTCTTTCAAAGCACATGTATACCCACAAAGCATACACGATAAACTGTCCTCATTGTGACAAAATGTTCAAAAATACATCGACCCTCAAGCAACACGTGAGAATTCACGAGGATCAGCGTCAGTACAAATGTGACACGTGCGGCGTTGGTTTCAATCGCCGCGACGGTCTCAGATTACACATGAGGGTACATCAGAAGACCGACAGTCGTGCACTCAAAGAATGCTCGTGTCAGATATGCTCGGAAAAATTTCCAAATCACTCGATGCTCGTTATACACCGTAATCGTGTGCACAAAGACGGCAGACAGTACACGTGTCACATATGCAATAGATCGATGCTGTCGACGAGATCGTTGGAATGGCACATGTCGCATATCCACAACGAAGCGATACCGGAAACGGGCCAAGTTGAGAACAACACGCAAACGGAAAACAAGAGGGTGTGCTGCGTACACTGCGACAAAACATTCAAAACCGAGATGATACTCCGAACTCATATAAAAAACACTCACATCGAGAAAGATCCGACGAAATGTTTGGACTGTGAGCAAACATTCACATCAGACGTTAGACTGAGACATCACATGATGATTGCTCACAATAGGCTCGAGGGTACACTGACGTGTCCTCATTGCCCGAAACGTTTTGTTAATCAATTGAGACTCAAGACACACATGATATCGCACTCGGAGGATAGACCGTATACGTGCGAGAAATGCGGCTTTAATCTCAAAACGAAGATACAATTGATAAAGCATCATCAGAATAGGCACAGCGACGAGAGACCGTTGCAGTGTCGTTACTGTCCGTGGCGTTGCAAACAAGTTAGCGCTCTAGTTTGTCACGAGAGAACGCACACCAACGAACGTCCATATTCGTGCATAGTTTGCCGACAGAGATTCAAGTATCTCGGTGATAAGAACAAACACGAGAGACGGCACGAAAGCCTCGGTGGCTCGGGATTCAAGCGAATCGTCGCTGGGAGAAATTTGAAAAATCCAAAAGTACGAATGGAGGAAACGTCGAATTCGGAACACGAACACGTTGATTATGACGTTAACGGAGATGAAGAGGATGAGAAGGGGGAGGAACAGAAACATTTGAACGAGGAGGATCAAGAGTACGAGGAACAGCGAGATGAGGAATACGTCGATGGCGAAGATATCGTGAAATTCGAGAGTCAAGGAATCGACGAGGTGTACGAACAGGAGTACGAGGAAACATCAAGGGAAGCGTCCGAGGCTGCTGAAGTCATAATGAACATGGAGGACACGCCGGTCTACACGGAGGAAGTGACGGCCGATAATGTCGAAGAGGCGGAAATAATCACCGATGAGATTATAACGAGCGATATATTGAATACGCAGCCGGATATGACAGTTGTTCATCTTCAACAGCAGGATGAATCTGGCAAAATTCAAGTTATACCAGTAATGCTGTCTCTTCCCGATCTCAGTGACTCCAGTGCAGAAGTAAATCTCGCTACGGCGTCGATAATGTATAACAATTGA
- Protein Sequence
- MMETSEPRVLKNHRILALKTMSLDKPKATLERPRAWVKNINELKKVTPRVKLFTPEVSNILELTRKSVRNIGEMKNTKNETKREHFQNYCRTCAGLKVPLIDIFSERGTQMRLAQQLKHLEDIKQHDNLSTQMCMDCICDLKMSYKFFMQIKKAQVKLSSMNSSLQMISGNAQRPTISEDDDKSCAAMTITLTNNPEKTTCAAKKSESEKIEESTNISPPRINYDDGERKEQDDARIDDGSRIKIEPETSEDYSLHYSDDNESIEEFDPDDPSFRSDVNDIMDLSHEKSAERTNNLDTKIETQHVENNSEISTEPLTKTEQSCDSNKNVYKYDAKLKAYVKVELLEGHESNNITGTASEKSTHDRTKETVKQPNILKRQASSNKHFLEKPVTRVGGSETTLVRTGKPKLLQTKKPKLDVENALNITNENENGIMYVTVKGTKPNELLLVKVRKMDKQAEKDEERKKSLKLETIEIDKKLKKLETTISTKEKEISEERARAIDKREQIIEEQIEEYKKKREKILGGTSGTPNALKFEDGMIRFVNPTENNENKKSDESEITKDASQDETAEIRHVADEEKKIEEQCGVKTRNEDENKSWISTCDYLTRLARLKRKWEFAKRKKENLQRNIGKSTKLDTMKKLYRMLGKRDNNLISLQDYLKQRKIVVRRLKNEDIAALSEDRNGSTIKNLPDLIDESPPDDYIHLENYLDCDYCPETFAFREALEEHLTSHDYKLMYWCDDCRLEFPTIKSKRVHNATCVKKFICRYCSAVLDSKGKKRQHEQKHVDSMHGQLCEVCGEKFKHQATLDQHFKTQHMTWEKIYQCPKCPKKFAFKQKLTFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRVRKHHPTSNKRACPVCNKIVPFYSLSKHMYTHKAYTINCPHCDKMFKNTSTLKQHVRIHEDQRQYKCDTCGVGFNRRDGLRLHMRVHQKTDSRALKECSCQICSEKFPNHSMLVIHRNRVHKDGRQYTCHICNRSMLSTRSLEWHMSHIHNEAIPETGQVENNTQTENKRVCCVHCDKTFKTEMILRTHIKNTHIEKDPTKCLDCEQTFTSDVRLRHHMMIAHNRLEGTLTCPHCPKRFVNQLRLKTHMISHSEDRPYTCEKCGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCIVCRQRFKYLGDKNKHERRHESLGGSGFKRIVAGRNLKNPKVRMEETSNSEHEHVDYDVNGDEEDEKGEEQKHLNEEDQEYEEQRDEEYVDGEDIVKFESQGIDEVYEQEYEETSREASEAAEVIMNMEDTPVYTEEVTADNVEEAEIITDEIITSDILNTQPDMTVVHLQQQDESGKIQVIPVMLSLPDLSDSSAEVNLATASIMYNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -