Apic004282.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Alloplasta piceator
Gene Symbol
Prdm15
Assembly
GCA_946863875.1
Location
OX333071.1:78911628-78915474[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0022 0.29 12.4 2.0 1 23 385 407 385 407 0.97
2 12 0.001 0.13 13.5 2.8 1 23 411 433 411 433 0.99
3 12 0.00018 0.024 15.8 1.1 1 23 438 461 438 461 0.96
4 12 7.9e-05 0.01 16.9 2.8 1 23 507 529 507 529 0.97
5 12 0.0014 0.19 13.0 0.8 1 23 534 556 534 556 0.97
6 12 0.00032 0.042 15.0 2.2 1 23 612 634 612 634 0.96
7 12 0.00074 0.097 13.9 1.5 2 23 642 663 641 663 0.97
8 12 1.1e-06 0.00014 22.8 2.1 1 23 674 696 674 696 0.96
9 12 6.9e-05 0.009 17.1 1.0 1 23 702 724 702 724 0.98
10 12 0.0016 0.21 12.8 1.1 1 23 730 752 730 752 0.96
11 12 5.3e-06 0.00069 20.6 2.0 1 23 758 780 758 780 0.96
12 12 0.00032 0.041 15.0 2.3 1 22 786 807 786 811 0.94

Sequence Information

Coding Sequence
ATGGCCATAAATGCAAGTTACTTTGATCCGCCGATAGACATGGACAGAGTTTGTCGTATTTGTTTGCTGGAAGGTACGAATTTGTCATCGATATTCTGCAATGGTCAGCCAGAAGTGGATGATTATTTGGGATTATCGCAGAAGATTCAATTGTGCGGATCAATAGAGATACACGAGAACGACGGTTTTCCATCTCTGATATGCGACGTTTGTATCTACAAGGCCAGCATAGCGCACGAATTTCGACTGCAGTGCCAGCAGTCCGATGCTCGATTGAGACTCATTTACGACAAACCCACGGAAACAAATATTGCCGATTCTTATACGCAGACGGAGCCACAAACGCGTATAATATTAACGCGAAAGATGCAAACGCCGCCGAGTGCCTATTACGTGAAGGAGGAATTGCAATCGTCAAACTGCCAGGATTACGCGACGGCGATCGAGGCTTTCGCAGTGGCAGCTGAGCAACATGGCCAGGATGAGGTCGTGACGACGGAGAGTGAACCGATGGATTGTCAGGAGGACGAGAAAATTTTTTTGTGTGACATTGGTTACGAGGCTACGAAGGAGATAACGGAGAAAGTAACGACGGAAAATCCAGCGAATATATTaacggtcgagcagcatcatcatcatcatcatctgcattcgcaaaatcatcagaatcatcaacatcttcatcatcaacaccatcatcatcaGTTGGAATTGCCTCTCGAGCAGGTTGAATTAACGACAACGACTCTCGTGACGGTAAACGCCGCCGGTGAATTACTGGAAACTCGTGAACTCATCGTAAAGGAGGACGATCGAAAATGCGTCGGTCAAAATGTGCTCAGCAACGAGAACGACGACGACGACGCCGCAGCGGCGGAATATTTGAACGAGCAATTGTTGAATTCCAGCGCGGTCGATGATTGCATCACGGGTGATCCCGAAGATTTCGAGGAACAGCAGCAAGACGCGTTGATATTGCAGCAACAACAGCAGCAACAACAAAACGATGAGGAAAAATCGGAAAAGCATTTGTCCGAAGAATTAAAAACAGTCGATTACAGCGACGACGATGATATTTGCGGGGGTGCCGACGAGGATTCTTACTTCGCCTCTCTGTCAGCGGAATCTGAAACAAAAGTTGCGCTACCAAAATACAAATGTAACTTTTGCCTCAAGCGTTACACAACCGAGAAAGCGCTGAGTAATCACAATCAGGTACACACGAAAAATTACAAATGCGACGTGTGTCAGAAGTTATTTTTCAAATTGAAAAACATGGAGAAACATCGTAAGATACACGACGAAAAGCCACACGCTTGTAAGCAATGTTACGCGAGTTTTGCAAAATTAGCGAATTTAACGCGTCACGAGAGAACAGTTCACGGTGATAAAAGCTCGACGTTGATAACGGATACGATGGAGATAAACGCGAACGATGAAACGGAGAAAAACGAGGATAACGAATCGGAGAACGAGACAATGAACGATAACGATGAATTCGACAGTCCATCGGGAATTTACAAGTGCGAAATTTGCGGTCAATTTTGTTCGTCGATGAAGAATCTAAAGCGTCACAGTTTGGTCCACGGTGAGAAAAAATATTCCTGCGGGGTTTGTAAAAAATGGTTCTTCAGGCCGGACACGTTGAAGAAACACGCGGAGAAGCACGGATGCGGTTTACTCGATAATTTTACGGACGACGATAAATTGTACGAATCAAACGAAGACAACAACGATAATAAGGACGAGGTCCGGACATTCGTAGTTGACGATATCGAGAGAACGAAGAAGGACGAGACGAATTGCGGCGAGGACGATAATAAAATCGGCGAATACAAGTGTCAGCATTGCGACAAAGTAATGGCGACGAAAAAGGGTCTTAGACGACACGTAACGCTGCACAAGCCAAAAGCCGAGCCCGTTACGTGTCCGATGTGTAAAAAAATTTGCGCCAGTCAAGCTCGTCTCTCATCGCATCTCAAGACTCACGCCAAACCAAAAGAGAAAGTCCAGCGTGAATATCTCTGTCACATATGCAGCAAAGTATATCCGAGTAATTCGTCATTGACTTATCACATGAGAACTCACACAGGTGTGAAACCGCACGTTTGTAAAATATGTAACAGCGGCTTTACGACAACTACGAGCCTCGCCAATCATATTAGAATTCACACCGGTGACAAACCGTTTGTTTGTCACGTTTGCAGCGCCGCTTTCGCCGTTAGGTCGGCATTCAGGCGTCATTCGACGCGTCACACCGGCGAAGCGAATTATCTCTGCAAAACATGCGGCAAAGCGTTCAAAAGGCTGAGCACCCTTAAGGAACACACTTACACGCATTCGGGCGAAAAACCGTACGTTTGTAAAACGTGCGGCGCCGCTTACAGTCACAGTGGTAGTTTGTTCGCCCATCAAAAACGCTGTCGCATACATTACAACGAGACGGTCAACGAACTGCAACACAATATGGCTCATCATATACACGTTAATAATGTACAAACTGCCGTACGTTCGCTCGCTGTTGTCGGTCAGATGTATTAG
Protein Sequence
MAINASYFDPPIDMDRVCRICLLEGTNLSSIFCNGQPEVDDYLGLSQKIQLCGSIEIHENDGFPSLICDVCIYKASIAHEFRLQCQQSDARLRLIYDKPTETNIADSYTQTEPQTRIILTRKMQTPPSAYYVKEELQSSNCQDYATAIEAFAVAAEQHGQDEVVTTESEPMDCQEDEKIFLCDIGYEATKEITEKVTTENPANILTVEQHHHHHHLHSQNHQNHQHLHHQHHHHQLELPLEQVELTTTTLVTVNAAGELLETRELIVKEDDRKCVGQNVLSNENDDDDAAAAEYLNEQLLNSSAVDDCITGDPEDFEEQQQDALILQQQQQQQQNDEEKSEKHLSEELKTVDYSDDDDICGGADEDSYFASLSAESETKVALPKYKCNFCLKRYTTEKALSNHNQVHTKNYKCDVCQKLFFKLKNMEKHRKIHDEKPHACKQCYASFAKLANLTRHERTVHGDKSSTLITDTMEINANDETEKNEDNESENETMNDNDEFDSPSGIYKCEICGQFCSSMKNLKRHSLVHGEKKYSCGVCKKWFFRPDTLKKHAEKHGCGLLDNFTDDDKLYESNEDNNDNKDEVRTFVVDDIERTKKDETNCGEDDNKIGEYKCQHCDKVMATKKGLRRHVTLHKPKAEPVTCPMCKKICASQARLSSHLKTHAKPKEKVQREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVRSAFRRHSTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRIHYNETVNELQHNMAHHIHVNNVQTAVRSLAVVGQMY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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