Apic011780.1
Basic Information
- Insect
- Alloplasta piceator
- Gene Symbol
- ZFX
- Assembly
- GCA_946863875.1
- Location
- OX333074.1:22891594-22898398[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.4 1.8e+02 3.6 0.1 3 23 16 36 15 36 0.94 2 15 3.6 4.7e+02 2.3 2.3 1 23 1031 1054 1031 1054 0.80 3 15 0.039 5.1 8.4 0.5 2 23 1139 1161 1138 1161 0.95 4 15 0.0064 0.83 10.9 0.1 2 23 1174 1195 1173 1195 0.97 5 15 2.7e-05 0.0036 18.4 1.4 2 23 1198 1219 1197 1219 0.97 6 15 0.023 3.1 9.1 0.4 1 23 1225 1247 1225 1247 0.95 7 15 2.7e-05 0.0036 18.4 4.5 2 23 1254 1275 1253 1276 0.95 8 15 0.12 16 6.9 3.7 5 23 1289 1307 1288 1307 0.97 9 15 2.4e-05 0.0032 18.5 1.5 3 23 1314 1335 1313 1335 0.97 10 15 0.014 1.8 9.9 0.5 2 23 1351 1371 1350 1371 0.97 11 15 7.4e-05 0.0097 17.0 0.7 1 20 1377 1396 1377 1399 0.92 12 15 9.2e-05 0.012 16.7 2.7 1 23 1407 1429 1407 1429 0.99 13 15 0.0026 0.34 12.2 3.2 1 23 1435 1457 1435 1457 0.97 14 15 4.7e-06 0.00061 20.8 3.9 1 23 1463 1485 1463 1485 0.99 15 15 0.00033 0.044 14.9 7.2 1 23 1491 1513 1491 1514 0.96
Sequence Information
- Coding Sequence
- ATGGATATTGGTGGAATTGCACCGTTGAGCGGCGGGGCAGTTGCCTGTCCTGTCTGCACGCTGTATTTGCGAGAAGGTATAAGCCTCCAAAGGCATTTGGATACTCATCCCAAGGAGCAAGTTATCGAGGCGCTTATCAAAGCCAGTGTGAATCCAGTGCAAAATTCAACGCTTGCGTCATTGTCTAATGTAACAAATTCTCCTAGTGTGCAGTCATTACCGCAACAGCCTCATCAGCAACAACAACAACAACAACAACAACAGCAGCTAAATTCTGGTTCGCAGATATCATCGCAATCACCTTATCCGGTTAGTCCCGTATTCGAATGTCCGCCCATAAATGCCATGGTGCCACCTCAATTTGCCTCATTCAGTTATCAGCAATTCGTCAATAACGGTACAATGATGATACCCCAGTATGCGATGGCGCCACAAGCCAATCAGATGATGCAGATGTTGTACAATCCGTACAGCATGTATCAGCAACAACAGATACCGACTGTCCAAATGATATCGCCGATAACGACGATACCGACGACCAGAATAAGGCCCGTGGTGACGGTAGCGAGTGACGCTGGTTCGAGAAATGTAATAATACCGGGTGGCTCTGTGGAGAGCACGAAAACCCAAATGACCAGCGAATTATTATCAGAGCCTGAAAATGAGAGGATATTGCCAgatattgaactcccgagaacaccgatgctgtcgaacgatgatgccgtcgtgacgacgacgacgacgacgacaatgatgacgacgaccgtgaaaccaaagatgccaccgccgttgcccctgccagtatcgtctccttcgtcatcattgtcattggcagtgacgatgacgactgcaacgacgaaccgtcagactaacgacgatgagacgagactgcgggtggagcacagagaacaacagactcagggtatcatgaaccgttgtatgccgtccgatcgtcaggattatcagaattcacgtgattccgatcattctgagacaatcatccccaatagcaataaccatgacgatgataacgacgacgacgaagaagacgacgacgatgaagtcaacgacgacgacgaagatgatgaagatgatgacgacgataatgagaagaacgataacgcacttgtggaagaacgcgatgaaacgagaaactccgagaccgaaacCGTTTGCAAGGCCACTGAATTCGAGGAATCGGAAAATCGTCGTTTCGCGCATCACAATACGATGGACAGAAGTTGCAATAACGACATCGAAACTGAGATTGATGAGGGCAAGAATGAACGAGATTTGTCAATGGACAGGAAAGAATCAATAGGTGAAATAGTTGGTATACGGGCGGAAGACGCGAACGATGAGGAAGATCGGGACAATGGGCGTCCAGAGGTCGAACAGTTGGAGCGTTTGCTGATTACGATAATGGAAACTAGTTTTGAGTCATCGAGACTTCAGAGCAACGATGCCACAATGGAAAAAATGGACGCTGAAGAAGAACGACAACAGCGGGACGGATCGAGCAACGAGAATGATGAAAACGTAGCTTTAATGCATTCGCCGGAGAGCAAAAGAGAGGACGAGGAGATCTTCAAAAAGTACACGAATCAATTACAGCACGAGGTTTCCAAAAAAATAATAAACGATAGTATACTCGGCGAATTTCATATTAATGAGAGCAATTTTAATAACACATACCGCTACAGGTGCAGCTTAACGGCACCTTCCTCACCCATTCTGCCGAAAAAGCTTTGTCGCACGCGATCTTTAACATCTGGTTTTCCCTCGAACGAAAATATGAATCTGTACCCAATTGGCTTTGACGCTATGACGATGCAAGAGCACAATAATAGAGAGGTCAAAAATTTCGAGGATAATTTCGACGAGGAGGACATGGAGATCGAGGAAATAGCAAGTCCGCATACGCCGTGCGTTAAGGATAATGAGAAAGTTGCGAATTCAAGATCCCACACCCCACTGTCGGCTATTAGCGGTATATCGGGACTGAGAGTCCAAAAGGATTTTGGTAAATCGTGCTCGCAAACGGTCTTGATGCGATCGTTTTCGCCGATGGATACGGAAAGCACGAGTGCCGAGGAGGACGACGACGACCAAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAgaagaagaagacgacgacgaagaagaggaggaagataaagacgatgatgacgacgccgacgatgatgaggaagaggaggaggaagatgagggcgacgtggaaaaaaattgCATCGATTCTTTAAATCTGTCGAAGAACAAACTTCCGGCGAAGTGCTCCAAAATCGTGAATAATGAAAAATCAAAAATATGCGAGGCGACGATACGATTGGAGGACAGTACTGAGAGTAAAATTGATGCTAAGCAGGTGTATCATCAATCGGTGATCACCGAGCACGTGAGCTCGTTTACGACCATTAACTCGGAACAACCAATTTTGATTCACGAAAGTGGTTGTACAATGTCGGACGACAAATCTGTACATAATAATATAATAAACATGACGGAATTGCACGATCCTACGACGAGCGCCGAGACTAAGAGTTTTCATAACGGTAAACACTTGCATCATATGCAATCGACGGAATTGTTGAATATTAACGAAGACGCTCACGCCGGGCCGATGAACGTTTTCGAATTCGACGGACTTCAAATACTAGTTCCTAGTACATTTATAAGTGAATCTTCCCAAAAAGCCATTAGCGCTACGAGCCAACAATCACTGGCGAGCAGCGAGGGCGGCGGGGGCGTCGACGAGGAGGTCAAGAGCGTTAATATGAGGGCCGATGAAACTATGCCACCGCGTGGCGAATTATCGGAACAAGAGAGCAACGGTTGTACCGAACATTCGGCCTGGCAGCTCTACATGGGACAGGAGTCGTCGCGGATGTCCACTTCGTACGATCTAATGGCGCGTGAAAGTTGGGAAGAATCTGAGGGTTCGGACAACGAGGTCGGTGTGCCCCTCTTAGACAGCCGCTCACTGGCGACGCACTTCACATCAAGTTTGTTCCTCGATCGTGACAGAAAAACACCGACGAAACGAACGTTCAAGTGTTCCCAATGCACGGAAGTGTTTGATTGTCCGAAGGAGCGTCGTGTGCACAGTACAACGGTGCACAAGGAGGCGGGTCCGAGTGGCAGCAGCAACGAAGTAACGAACAACATCGAATCTAAGGATTTTAAGCTGCTCGAGGGTCGTATGAATGTATTCGACGATATATTCGTGTCTGGTATACACGTTCAACAGTCGCACAATCAACAACAACCATTGCTGCATCAATTGCAACCGCCACAACAGCCGGAAATTTCGAAGAATGACGGTGACAATCAGAAAGTCGAGAATCTTGCCCTGCCCCAAATATCGGAGATATCGTGCGCCATGTGCAGTCAACGTTTTGGCAGCGAGAGATCATTGCAGATGCACAACAGGCGTGTACACGGTACCGAGGTTGCGCGACGTTTACAAGAGATATCAAAGTGTCAGGTGTGCAACGAGGAATTTCCATCGGTAATGTTGTTCAATGCCCATCTCAAGATACACCCACTCGAgtgcgcccagtgcggcaaatatttttatcgtaagcctaatttcaagctccacatgaaacgtcatcttggcatcaagccgtttccgtgtacattgtgcgacaaggcatttctcaccaagcaaaaacttgacgagcacacgaatggccatacCGGCAATGCACCGGTTAAGTGCAATTTGTGCAATGAAACGTTCCGCAGATATTCAAATTTGACACAGCATAAAAATCGGCATCATCTCAATATAAAGAGAAAATTAAAGGATTACATATGTCATTGCGGTGAGGTGTTTCACACGAAGAAAAAGCTCGCTTGGCACAAGGAGACCCACGATGAAAAGCCAAAAGCGTGCACTTACTGCAACGAAAGATTCATACACATGGCGAGCTTGACGAGACACATGAGACGCGCTCACAATCGTCGCTTCGTGCCCGATGCACAACGGGAAAGTGAAAACGTCGAATGCCCGATATGCAAGTGCATATATCTGAGATCGTCATTGTCCGTTCACATGAGAGTTCACAATGGCGAGAGACCATACGAATGTCAGGTGTGCTCAAAGGCATTTAGCACCAAATGGAATTTGCAATTGCACAAATGGACTCACGCGGCTCGCAGCACGAAACCGTTCAAGTGTAATCAGTGTAGCGCTGCGTTTTATCGACACAGCGATTATACTGCTCACATGAATTCACATCGTAACGTACGACCGTACACGTGCAATTATTGCGGGGCTCAATTCATAAGGAAATATAACTGTCTGCGACACGTAAAAGAACATGAAGAGAACAAGGCTTACACGTGTGACGTTTGCAACAAAACATTTCATCGTTCTTACTATCTCAAGGAGCATCTACGTGTGCATTCGGGTGCGCGTCCTTACACTTGTCATATTTGTGGTAAATCCAGTAGCACTAAGTCCAATCACAACAAACACGTTAGAATTCATCACGCTAGAGAGCCTGTAAATACGGAGAATTAA
- Protein Sequence
- MDIGGIAPLSGGAVACPVCTLYLREGISLQRHLDTHPKEQVIEALIKASVNPVQNSTLASLSNVTNSPSVQSLPQQPHQQQQQQQQQQQLNSGSQISSQSPYPVSPVFECPPINAMVPPQFASFSYQQFVNNGTMMIPQYAMAPQANQMMQMLYNPYSMYQQQQIPTVQMISPITTIPTTRIRPVVTVASDAGSRNVIIPGGSVESTKTQMTSELLSEPENERILPDIELPRTPMLSNDDAVVTTTTTTTMMTTTVKPKMPPPLPLPVSSPSSSLSLAVTMTTATTNRQTNDDETRLRVEHREQQTQGIMNRCMPSDRQDYQNSRDSDHSETIIPNSNNHDDDNDDDEEDDDDEVNDDDEDDEDDDDDNEKNDNALVEERDETRNSETETVCKATEFEESENRRFAHHNTMDRSCNNDIETEIDEGKNERDLSMDRKESIGEIVGIRAEDANDEEDRDNGRPEVEQLERLLITIMETSFESSRLQSNDATMEKMDAEEERQQRDGSSNENDENVALMHSPESKREDEEIFKKYTNQLQHEVSKKIINDSILGEFHINESNFNNTYRYRCSLTAPSSPILPKKLCRTRSLTSGFPSNENMNLYPIGFDAMTMQEHNNREVKNFEDNFDEEDMEIEEIASPHTPCVKDNEKVANSRSHTPLSAISGISGLRVQKDFGKSCSQTVLMRSFSPMDTESTSAEEDDDDQEEEEEEEEEEEEEEEEEEEEDDDEEEEEDKDDDDDADDDEEEEEEDEGDVEKNCIDSLNLSKNKLPAKCSKIVNNEKSKICEATIRLEDSTESKIDAKQVYHQSVITEHVSSFTTINSEQPILIHESGCTMSDDKSVHNNIINMTELHDPTTSAETKSFHNGKHLHHMQSTELLNINEDAHAGPMNVFEFDGLQILVPSTFISESSQKAISATSQQSLASSEGGGGVDEEVKSVNMRADETMPPRGELSEQESNGCTEHSAWQLYMGQESSRMSTSYDLMARESWEESEGSDNEVGVPLLDSRSLATHFTSSLFLDRDRKTPTKRTFKCSQCTEVFDCPKERRVHSTTVHKEAGPSGSSNEVTNNIESKDFKLLEGRMNVFDDIFVSGIHVQQSHNQQQPLLHQLQPPQQPEISKNDGDNQKVENLALPQISEISCAMCSQRFGSERSLQMHNRRVHGTEVARRLQEISKCQVCNEEFPSVMLFNAHLKIHPLECAQCGKYFYRKPNFKLHMKRHLGIKPFPCTLCDKAFLTKQKLDEHTNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLNIKRKLKDYICHCGEVFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRESENVECPICKCIYLRSSLSVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSSTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -