Apic013798.1
Basic Information
- Insect
- Alloplasta piceator
- Gene Symbol
- -
- Assembly
- GCA_946863875.1
- Location
- OX333074.1:59703754-59706414[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0026 0.34 12.2 0.5 1 20 151 170 151 171 0.94 2 13 0.00012 0.016 16.4 2.5 1 23 179 202 179 202 0.96 3 13 4.9e-05 0.0065 17.6 3.1 1 23 208 230 208 230 0.98 4 13 0.00012 0.016 16.3 0.3 1 23 366 388 366 388 0.97 5 13 0.00027 0.035 15.3 0.3 2 21 399 418 398 419 0.93 6 13 0.00037 0.049 14.8 3.3 1 20 441 460 441 463 0.92 7 13 0.002 0.27 12.5 0.4 1 23 468 491 468 491 0.92 8 13 1.2e-06 0.00016 22.6 0.3 1 23 497 519 497 519 0.98 9 13 0.00062 0.082 14.1 3.5 1 23 526 548 526 548 0.98 10 13 0.00035 0.046 14.9 0.4 3 23 556 576 554 576 0.97 11 13 0.0004 0.052 14.7 0.2 1 23 582 605 582 605 0.96 12 13 2.3 3e+02 2.9 0.6 1 23 619 641 619 641 0.86 13 13 0.1 14 7.1 0.0 2 23 864 885 863 885 0.96
Sequence Information
- Coding Sequence
- ATGGAGACTCACGAGAACGATCATCGTTACGTGACTTTTCCAATATCGGACGTTCACGAAGGGATTCGCGAAAACCTTGCGTCGCACGAAGAGGAAATACGCGAGTCGAGCAACAACGAGTGTATACTTCCCGATAATTTAAACGACGCGGAGGTCAACGATGTCGACGGTGCGATCACCGAGGCACAGGTCGCCGTTGCGATACTGACCGAACGGTCCGACGACGACGAGGAAAAGTCTCTCGTTTATCCAATTTACATAAAAGAGGAGGAACATCATCGGTATACATCCGGCGACGACGAATCAATGGCGGTCGAAGCTCTGAGACAGCTCGGCGGTATGTATCAATCGACTTTTGAAATTAAGAAACACCGTTGTCAAAAGTGTTCGTCGAACATCGGCCAATCGGAGCTCGCGAAACATCACGAGATGTGCACGGCCGTTAAATTACATTCGTGCACGACCTGCGGTGAGAATTTTGAGAGAAAGCAAGATTACGAAAATCACGTTGTCTGTCATCAAGTCGACAGGCCACATTCGTGTCGTACTTGCGGCAATCTTTTTCGCTCAAAGGCAAATTTACAGACGCACATGAGGCAGGTGCACAGAGCCGAGAAACCTCACAGATGCACGATATGCGGCTCGGATTTTCATCGTCCGTCGAGTCTGTCGAATCACATGAAAATTCACACTTACGTCGCGGGTCGAGCGCTCGTGTCGCAACAGCCGAGTCAGTCCGAAACACTGAGAAAATGGCCGATCGAGCAGGAGACTCAAAATTCAACGGCATCGACTTACGACGTTCAGTGGTCGGTGCCGTACAATTTTACTGCCGAGAACGTCGATGTTTTACCGGTGAGTAGCGAGAAAATTGATACCCTTCAAGAATTCACGGTCATGCCGAACGGCGAAGTAGCGCAATTCGAATATACACCGCAAGATCCACTGACGAGTCCGATAAACGAGCAATACGACATTGCTATAAATGATTATTCTCAAACAGCCGATAACAATGTCAAAGCGGAGACTCTGGCATTCGCGTCGAGCGACCAATCGAGGAATTACGTCGAGATCGATGTCACTCGGGATAAATCACACGTTTGCGGACATTGCGGAGCGATATTTTCACGCGCCACCGCACTCGCGTCGCACGAAAAGATACACGCGTCGAAAACAAGCTGGTCGATGCCCGTCGAGTGCGAATATTGCGACAAGCAATTTCAAGATTCCGTTCATCTCGCCACGCATCAGACGACTTGCGCAAAAAAATTGATGCGTTGCAACGGCGAGCAAGGTACGGGCGGTGGTAAATGGGGTAAGCACGCTTGCCCGGAATGCGGCAAAAAATTCACCACAAAACAGAAGATGTTTCGTCATCACTGGATACATCGGAAGAAGACGCACTCTTGCGAGATATGCGGAACACAATTTGAGAAACAAAATCAGCTCGACGAGCATCGTTTGGCCGCTCATCCGGGCGATTCGCCATTCACGTGCACGGAATGTGGCAAGAGTTTCGTTTCTCGTCAGGGTCTCTGGGAACACGGTAGAACGCACGCCGGTAGTCCGGCGCATTTTCACTGCGACACTTGCTCCAAAACATTTGCATCGCGACAGGGCTATCTCATACATCGTCGCACGCACACGGGTGAGCGACCGTACGGTTGTAAATTTTGCTGGAAGGCTTTTCGCGATGGTGGCACATTGAGAAAACACGAGCGCATTCACACGGGCGAACGTCCACACGTGTGTCCACTGTGTTCGCGCGCTTTCAATCAAAAAGTCGTTCTTCGTGAGCACGTAAGATGGGTGCACGCTGCCGGTAAGAACGAGACCGATGTCAACGGTCCACCGTACCCTTGTCCACTGTGCGGCGGTCTGAATCAAGATCGCGACGAGCTTTGCGCTCATATCGTCAAACATTCGGATCAGATGATCGCCGAGGCAAAAGCCAAGACCAACAACAACGCGAGCAAAGTTAAGACAACGAGGAAGAGCAAATCACGGGCTGGCGCGTCCGCGACTCTGAAAACGCTGAAAAACAGCACTGACGACGGTGGAATTACGAAGGGCGAGGAGGACGAGGCTCTCATGTCGATCACCGTGAATCACAAGGACGAAAGCGTGATTATCGTCGATGGGACGAAAGATGACGCGGGGGACATCAGTGATGAGGACGGAACGAGAGCCGATGATCTCGCTACCCCTGACGAACGAACGATCGTTCGTGAAATACGTGACAGCGATATTTTGCATCTTGTACGGAAAGGCAACGATACGCTGCGTCTGTCGGCAACCGACAGAGCCAACGATACTCTGCATCTTATTACTAAACAGAACGAATCATTGCCGGTTTTGGCAATCAGAAATCCACAGAGTCACGAGAATTTTTCGTGTCAAATTAGCGATGGTGATATTGGAGAATCCGGCGGTGAGAGACACAACGACGATATTGGGGACAACGATGAAGAGGATGAATGCACGATGGACGAGGAAACGAGTCACGTGAGCGTTGAACAGGTGACGCGATATATTCACGAATCTGAGAGACGCGAGAGCGACGATGATGAGGACGAGGACGATGAAATGGTTTGCGGTATATGCGGCGATGATTTTGATGACAAAAACGTACTGATGGAACACGTGAAAATTCACATATAA
- Protein Sequence
- METHENDHRYVTFPISDVHEGIRENLASHEEEIRESSNNECILPDNLNDAEVNDVDGAITEAQVAVAILTERSDDDEEKSLVYPIYIKEEEHHRYTSGDDESMAVEALRQLGGMYQSTFEIKKHRCQKCSSNIGQSELAKHHEMCTAVKLHSCTTCGENFERKQDYENHVVCHQVDRPHSCRTCGNLFRSKANLQTHMRQVHRAEKPHRCTICGSDFHRPSSLSNHMKIHTYVAGRALVSQQPSQSETLRKWPIEQETQNSTASTYDVQWSVPYNFTAENVDVLPVSSEKIDTLQEFTVMPNGEVAQFEYTPQDPLTSPINEQYDIAINDYSQTADNNVKAETLAFASSDQSRNYVEIDVTRDKSHVCGHCGAIFSRATALASHEKIHASKTSWSMPVECEYCDKQFQDSVHLATHQTTCAKKLMRCNGEQGTGGGKWGKHACPECGKKFTTKQKMFRHHWIHRKKTHSCEICGTQFEKQNQLDEHRLAAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFASRQGYLIHRRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETDVNGPPYPCPLCGGLNQDRDELCAHIVKHSDQMIAEAKAKTNNNASKVKTTRKSKSRAGASATLKTLKNSTDDGGITKGEEDEALMSITVNHKDESVIIVDGTKDDAGDISDEDGTRADDLATPDERTIVREIRDSDILHLVRKGNDTLRLSATDRANDTLHLITKQNESLPVLAIRNPQSHENFSCQISDGDIGESGGERHNDDIGDNDEEDECTMDEETSHVSVEQVTRYIHESERRESDDDEDEDDEMVCGICGDDFDDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -