Apic010955.1
Basic Information
- Insect
- Alloplasta piceator
- Gene Symbol
- -
- Assembly
- GCA_946863875.1
- Location
- OX333074.1:3838988-3843999[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00037 0.048 14.8 0.5 1 23 152 174 152 174 0.96 2 10 0.00075 0.098 13.8 0.6 1 23 180 202 180 202 0.97 3 10 1.9e-06 0.00025 22.0 1.6 1 23 208 231 208 231 0.94 4 10 0.00021 0.028 15.6 1.4 1 23 238 261 238 261 0.96 5 10 2.5e-05 0.0033 18.5 1.5 1 23 267 289 267 289 0.99 6 10 0.0081 1.1 10.6 0.1 3 23 296 317 294 317 0.91 7 10 1.9e-05 0.0025 18.8 0.7 1 23 324 346 324 346 0.98 8 10 3.6e-05 0.0047 18.0 1.3 1 23 350 372 350 372 0.98 9 10 5.8e-05 0.0076 17.3 0.1 1 23 377 399 377 399 0.98 10 10 4.6e-06 0.00061 20.8 0.4 1 23 405 428 405 428 0.97
Sequence Information
- Coding Sequence
- ATGGGCATGCGAAAAATAGGTTTTTCCTTTCCGGATATACTTCAAGAAAGGCGCCATCAAGCGAAGAAGCGTGGTCGTCGCAAGCAGAGTATACCGGCGAGAAACTTGAAGAAATGGGAAGAAACGTGGGAGACATCGAGCATCGAGGTGAAGAGCGAACCGACGAGTCCGAGCGTTGAGAAAACATCGGATCTCAAGTCGGTGCGAACGAAGAGAAGAGCAGCGATGAAGAAGGCGGATCCTAAGAATCAGGAAAAATCAGTGCCGCCGAAGAAGCGTAAATTCACGCGCAAGGACGAGGGAACGTCGAGGAAGGCGATTATTTATGAAAACGGTGACGACGAGACGAGCGAGGATTCGAGCTCCCACGAGGAATGGTTCGACTCGGATCTGGAGAAACAAGCAAAAGAGAAGACAAAAGTCCGAAGACCACGTTTGCCAAAACAGGATGTCTACGTTTGCGAGATATGCCAGAAGCAATTCACCGTTGGACGAAGCTTCCGTCGTCACGTTGCCAATCATTACAACACAACCGTTTACGAGTGCGAAGCCTGTGACAAAAAATTCAGCGCACTGAGGAGTTACCGTCGTCACGTTGAGAATCACAAGAATTCACGTTGGTACGATTGTCCATCGTGCGAGAAACGCTTCAAGAGCAGCTCCAATCTGAAGAGTCACATCATTCACATCCACGATGAAAATCCACCGCTCTACAATTGCACCGTTTGCGATTATGCTACGAAAACGCCGTATTGTCTTCaggatcatatagcgcgaaagcacaccgaggaatacaagtacaagtgcggcgtgtgcgacaaaaattacaagagcgagagagattacaagtcacatttgaacagccacgacgatggaccgcaaatttgcgacatatgcggcatttcctatccgagcaagctcgcgctctattcccatcgttattacaagcacatggcaaagttgaaacccttcgaatgctcgatttgcaagcaacgcttgtcctcagagaagaatctcaaggctcacatgctgcagcacaatcaggaatacgtttgtgaattgtgcggtatgaagttcaccagcaaagtacgtttgtcgacgcatcgcaagtcacacgctgaaaaatcattctcctgcaccgtttgcggacgtgctttcgcaagtttggccacgcaacgcgtacacatggtcacccattcccaggtcaaaccctacgcctgtgacatttgtggctcgagttacacccagaggtcatcgctgatgttacattggagaaccaaacatcccgAGGCCACGGAACCACCTCCGCCCGTTACGCTTCTCAATATCGGCGATTTTTTGAAACCCACCAACGCCGAATAA
- Protein Sequence
- MGMRKIGFSFPDILQERRHQAKKRGRRKQSIPARNLKKWEETWETSSIEVKSEPTSPSVEKTSDLKSVRTKRRAAMKKADPKNQEKSVPPKKRKFTRKDEGTSRKAIIYENGDDETSEDSSSHEEWFDSDLEKQAKEKTKVRRPRLPKQDVYVCEICQKQFTVGRSFRRHVANHYNTTVYECEACDKKFSALRSYRRHVENHKNSRWYDCPSCEKRFKSSSNLKSHIIHIHDENPPLYNCTVCDYATKTPYCLQDHIARKHTEEYKYKCGVCDKNYKSERDYKSHLNSHDDGPQICDICGISYPSKLALYSHRYYKHMAKLKPFECSICKQRLSSEKNLKAHMLQHNQEYVCELCGMKFTSKVRLSTHRKSHAEKSFSCTVCGRAFASLATQRVHMVTHSQVKPYACDICGSSYTQRSSLMLHWRTKHPEATEPPPPVTLLNIGDFLKPTNAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -