Apic017216.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Alloplasta piceator
Gene Symbol
-
Assembly
GCA_946863875.1
Location
OX333076.1:2248699-2253174[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00023 0.03 15.5 1.2 2 23 340 361 339 361 0.96
2 11 0.0091 1.2 10.4 1.9 1 20 370 389 370 391 0.94
3 11 5.5e-05 0.0073 17.4 0.8 1 23 426 448 426 448 0.97
4 11 6.2e-07 8.1e-05 23.5 1.5 2 23 507 528 506 528 0.97
5 11 0.0019 0.25 12.5 3.4 1 23 533 556 533 556 0.96
6 11 2.5e-06 0.00032 21.7 0.4 1 23 591 613 591 613 0.98
7 11 8.5e-07 0.00011 23.1 0.9 1 23 623 645 623 645 0.96
8 11 3.6e-06 0.00047 21.2 1.2 1 23 651 673 651 673 0.99
9 11 1.2e-05 0.0016 19.5 0.2 1 23 679 701 679 701 0.98
10 11 0.0021 0.28 12.4 4.2 1 23 707 729 707 729 0.98
11 11 0.00045 0.059 14.5 0.3 1 21 735 755 735 756 0.94

Sequence Information

Coding Sequence
ATGAATGTTAACAATGATACAAAGACGGTCGTTAATTCCATCGAAAAATTTACGGGTAGCGAGTGTCGTGTATGTTTGGCAAAATGCAACGAAGTTTGGGAAATTTTTCATCCGACAAATCTGGATATAAGGCAAAAACTGACGGAGTTTGCCGCTGTACAGGTGGAAGATGGCGATGGATTACCGACGACGATTTGCCACAATTGTCGTCGTTTGCTCGACGTTTCCTACGAATTCAAGCTTCAGGTTGAAAAATCCGATGCAAAATTGCGCCAAGCTTTCATGCTCAAAGATCCAAGCGACGAAACAGCCAAGATATTGTCGATGACCGTCGACGCCGCTATAACGGAAGCGATAGTCGACGAAATGACGCAGGGGCACTGCGGCGAGATGGTAAACTGCGTGGAATTGCAGAATCATCTTGGAGTCCAGGAAAACGGCATTGTTACGGAATTGAACGATCAGCATTACGCTCATCACGAGCCGATTATCTTCCGGATAGAGCCGCCGCCTCACGATCCTTGTATCATGGAGCAAAACATAACCAGCATCGAGAGTGAAATTTGCAGCAACGCAAAGCGCATCGCCATGAATTGCGAAGATAATCGCGCCGTCGATGCTCTCTTGGACAAATACGAGGGTCTCGGAGGATCGAGTTTAACGACCGGATACAAGAGCGAGCCGATGTTAACGTCCGAGAGCGAATTATCCGAGGTCGAGATTAACGAGAATCACGAGATATGCGAAGGAAACGAGTTAATGGTGTGTCGCATGAAGAACGAAAGTACGAAAGATGGTTTTGCCAAGGTGGAGATGATTCAAGGTGACTTTGCCGGTAAGGTAGAAAATAATGTTATATGCCACGATGATTTCCCGAGCATGGAAAATACTGGTATCAAAGAAACGACCGTTATCGAGGATAATAAAAACGACTGTAAGGACGAAGAGGTGAAGACGGAGGCGCAGCTCTGGGAGAGCGACGAGGAAAGGCCTCTGAGTGCCCGAACTCGTCGACTAAAATGTACCCAATGTATAAAAACATTTTCCACAAAGACCTCGCTGGAAAGACACGCCGAGATGCACGCGAACAAAACGAAATTACGCCGTTACGTTTGTCACATCTGTGAGAAGCAATTATCTAGTATGACGCAATTGAAGAATCACGAGTGCAATTTGTCGAACGAGGAGACAAATCGCGAGGATATCGCGAACGAGGCAACGCGCCAACGAGGAGAGAAAAGATTATCGCGCAACGATGCCAAGAGAGGCACGAAATTTATTTGCAAAATATGCGGCAAACAATTCACGTATCAAAAGCCATTTTTGACCCATGCCAGAATACATCTGGATTACAAGCCCGAGTCGATCGTCGAGAAGGGTGAAAATGTCGTTGCGGCGGTCTCGGACGAATCCAACGAGCGTGGACGCgcgtcggagaacgaaaacggggacgacgaggacgacgactacaacgacgaggatgacgatgacgaggatgatTTGCCAATCGAGGGCTTACAGTGCACTCAGtgcggtaaattattcgccaccaagagaaatctcaagaggcacatatccactcacagtggattgaagtatcattgttcaacgtgcagcaaggaattttcgcgcatcgacaagctcaaAGAGCACGAACAGTCGAAACACAAGGAGGAATTTTTTGCATCCACGGATACAGATTCGGATGACGAGACTGACAACGAGGGCAAGAATCATGATGGTAGAAAGAAGGAAAAGATAAACaggccgcacaagtgtccgatgtgcccaaaggcatttgcgcaggagcaatcattggcgaatcacatggagcgtcacaaacgagtcaaggacacgcagaagcgttttctctgcgaagtatgcagcaaatgttttgcccagagtggctcattggtggctcacatgcgtacgcacacaggcgttaaaccgtacgtttgcagtgtatgcagcagggcatttacgaaaagcacgtatctgcaattgcatcttcgaactcacagcggcgagaaaccttacatatgtcagtattgcagtcgagcttttgctcgtgcgaatactctggctcgccacataacgatgcacacgggtgaggcgaaatatcattgtcaaatatgtatgaaatcgttcagacgtttgacatcattgaacgagcacacgtacactcacacgggtcaaagaccttacgcctgtaaaatatgcacaaagagATACAACAACGCAGGCTCGCTCTACGCTCATACGAAAAAGTGCAAAAATGCCCAACAATCCGATCCAACAACGGCTTACAATGTTTTGCCGATCAATGACGAGCCAATGATTCATCAGGAATTGAACGATCATCAACAAACGATGATTTATACTCAGAGGAAATTGAACGATGATATCACGATCGAACAATTGCCACCGTCCTCGCAATTCATCATATCGAGTAATTCCTCGCCGACCTTGAAGACCATGACGAACAGCGGTATTCCACAATTTACGGTCGAAGAGCCGAATTTTTGCAATGTCAAATCATACAAAAATAATTCTTACTACACGATATATCCTGCCAATATGTAA
Protein Sequence
MNVNNDTKTVVNSIEKFTGSECRVCLAKCNEVWEIFHPTNLDIRQKLTEFAAVQVEDGDGLPTTICHNCRRLLDVSYEFKLQVEKSDAKLRQAFMLKDPSDETAKILSMTVDAAITEAIVDEMTQGHCGEMVNCVELQNHLGVQENGIVTELNDQHYAHHEPIIFRIEPPPHDPCIMEQNITSIESEICSNAKRIAMNCEDNRAVDALLDKYEGLGGSSLTTGYKSEPMLTSESELSEVEINENHEICEGNELMVCRMKNESTKDGFAKVEMIQGDFAGKVENNVICHDDFPSMENTGIKETTVIEDNKNDCKDEEVKTEAQLWESDEERPLSARTRRLKCTQCIKTFSTKTSLERHAEMHANKTKLRRYVCHICEKQLSSMTQLKNHECNLSNEETNREDIANEATRQRGEKRLSRNDAKRGTKFICKICGKQFTYQKPFLTHARIHLDYKPESIVEKGENVVAAVSDESNERGRASENENGDDEDDDYNDEDDDDEDDLPIEGLQCTQCGKLFATKRNLKRHISTHSGLKYHCSTCSKEFSRIDKLKEHEQSKHKEEFFASTDTDSDDETDNEGKNHDGRKKEKINRPHKCPMCPKAFAQEQSLANHMERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCSVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICMKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHTKKCKNAQQSDPTTAYNVLPINDEPMIHQELNDHQQTMIYTQRKLNDDITIEQLPPSSQFIISSNSSPTLKTMTNSGIPQFTVEEPNFCNVKSYKNNSYYTIYPANM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-