Apic016426.1
Basic Information
- Insect
- Alloplasta piceator
- Gene Symbol
- -
- Assembly
- GCA_946863875.1
- Location
- OX333075.1:46487496-46506692[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.038 5 8.5 0.3 3 21 8 27 6 28 0.85 2 14 1.8 2.3e+02 3.2 0.0 2 20 34 52 33 53 0.92 3 14 4.4 5.8e+02 2.0 0.3 1 12 226 237 226 246 0.87 4 14 0.016 2.1 9.7 1.4 1 23 433 455 433 455 0.98 5 14 0.00038 0.049 14.8 0.1 2 23 459 480 459 480 0.97 6 14 0.00014 0.018 16.2 3.1 1 23 492 514 492 514 0.98 7 14 0.02 2.7 9.3 0.3 1 23 533 554 533 554 0.95 8 14 0.00073 0.096 13.9 0.1 2 23 560 581 559 581 0.95 9 14 5.3e-05 0.0069 17.5 4.8 1 23 630 652 630 652 0.99 10 14 2.3e-06 0.0003 21.8 3.7 1 23 658 680 658 680 0.96 11 14 0.00026 0.035 15.3 4.1 1 23 686 708 686 708 0.97 12 14 1.6e-06 0.00021 22.2 0.8 1 23 714 736 714 736 0.98 13 14 0.0001 0.013 16.6 0.2 1 23 740 762 740 762 0.99 14 14 0.00043 0.057 14.6 0.2 1 23 770 792 770 792 0.97
Sequence Information
- Coding Sequence
- ATGGGCTCCGTTAGCTTGGTCTGTCCAATGTGCTGCGGAGAGACGTTCGACAATTCGCAGTCATTGAAATATCATTTATTGAGCATGACCGACAATCTTTATTGTCCAAATTGTTCAGAAAGATCGGACTCCGTCGCTGCTCTCATTCAGCATCTCGATTGCTGCGGCGAGTCCATGGAAGCTGCGAACGGACTTTCGGAGATAGACGAGACTGAAGTCTCTGTGGACACAAAGGAGGATGGCCCCAATCACAATTATTTGGCGACTGTCAACGAGGATGGAAGGGTCGTGGTGGGACATTTGCAAGCGATGGATGATCCTGATGAGCACATTATAGACAAAATGGACATAGACGACAATGCCGATGACAACGACGATATATTGGAACATTTGGACGAGATTGGTGACATTGACATTCCAAAAAGCGAGGTGGAAGAGGAGATTGAAGAAGTTGAACTGAGGGACGAAAGGATAAAAGACGAGAACTCGTCGAGCGAAACAATCGACAACGAAACGGAATTGATCGAGAGCGAGAGCAACGGAGAAATAACGAATTTCGGGGGAATCGATCCTCTCGAAGAACCCGCGGATGAGGAAGTAGCGGAGGAAGAACAGGATGAGACTGAACTTGTCCAAGTAAAGCAGGAGATATGCGAGGTGGAAACAGAGGCTCTGTACAGCTGTAGCAGCTGTAGCATGAGTTTCAACAGCGTATTGTCTCACATAAAGGAGTATCACGATGGTCAGGAAGTTGTGCTTGAAATGGCTGAACAGCAGATGGAGGATTTGCCGGAGGAGCCCCACGATTTCGAGGCGATGGTTGATGACGATCAAGCGACAAATTCTTCGCATGAGATGAAAGAAAGCTCCAGCATTGGAGAACGTGCGTCAGTCGGGTCTGGAACTTCCGGTGGCGTTGGTTTGCCGCGTCAACGTCAAACGATGAACACACTGAGAACGGAAGAATGCGTCGACAGCGAGGGACGTCTTTATACGAGAAAAGTCGTTCAGATCGAGAGATTTTGGGATCGTGGTTCGGCTGCGGCGACCGGGGCACAATCTCAGTTGCAGCAACAACAGCATCAACAGGCAACAAAGAGTTCGCCGATGATTGAAAAATTCTTCTCAAACGCCGAAGGTCTGAAAATTCGGGCTAAAAGTCCGGGCATACCTGTGACGAATTCAACGATCGTCGGCGTCGTAACTTCCCCGACGAGCACGACGACAATGTCAAACAACACGACAAACGCCGTTGAAAATTGTAACGATAATTCCGCGAGACATCAACTGAGAATGTACAGATGCAACAAGTGTCTCGAACAATTCGTCAAACTCGCGGAATTTCGCGTTCACGCTTGTATACACGGAAATAATCGCTGTGATCTTTGCGATCAGGCTTTCGCTAGCGCGAAAGCACTTCAATTGCACTCACGCATTCACGAGGTCGAGACCGAGGGTGGAAGCGACAATAATTTCGTTTGCCAAACTTGCGGCACGGAATTCACGTCCCACAAGAGTTTACGATTGCATTCGAGAATGCACGCACCCGTTAGAGCAAGACACGTCGACGCTCCCGAGGGAACTTCAAACGAAATTTTCACGTGTCTCGAATGCGGAAAAACACTTTCGGAATCGTATAGAAAAGCTCATATGGCGTTGCACAAGGGAGATTCCGTGACTTGCACGGTTTGCAATAGGAAATTCGATTCAGCGGACAGTCTGGCTATGCACGCTGCCGTTCATCTCGAATTTGGAAATTCCCAAAATCACAAGTTCCATCAATCGACCGAGGATCGAAAAGACGACGAATCAAACAGGGATGGTCTCAGGTCCGCGAAGGGAAAGAAAAATGATAAATCGGGTGGAGGGGACGCTCAGGAAAAGCCTTATCAGTGTCAACATTGCGGCAGAAGATTCACCAGACCTCATGAGAAAGTTAAACACGAGAGAATCCATACGGGAGAAAAGCCTCACGCTTGCGAGGTTTGCGGAAAAACGTTTCGCGTTTCTTACTGCCTGACGCTTCACATGAGAACGCACACGGGTGTTCGACCATACGCTTGTCAACATTGTGGCAAAAGATTCAAGGCGTCGTCGGTCTACAATCATCATTTGTTGACGCACGGCGAGGAACGAGCATACACGTGTCCTTATTGCCCGAAGACGTTCAAGACTCGTGTGCAATTGGCAGGTCACAAAAACAGTCACACGAAGCCATTTCGTTGCACCGAGTGTTCGCGTCCATTCGCATCACTTTACGCAGCTCGAGCGCACATTCAGACCCACAAAAAGGACAATAATTTGAAATTCAGCTGTTACATATGCGGCGCATCTTACGGTCGTGCGTTCGCACTGAAGGACCATCTTAAGCAACACACGGGACAGGCCGTTCTCGCAACACCGGAAGCAGCGCGCGAGGAGGAAGTCGCCGATGCTGATGATTTTTTGATAACGGAGGAAACAGAGGAATATGAGGAAATCGAGGAAATCGAAGAGATCGAGGAAGTCGAGGAGGAGGAGGAAATCAAATTAGCGGCCGTTGCAGCTGCAGCCGCAGCCGGCGACGCCGATGCCGATGTTCATCACACTTTGAACCTCATCGATGCGCACGAACAGTCTCAATGA
- Protein Sequence
- MGSVSLVCPMCCGETFDNSQSLKYHLLSMTDNLYCPNCSERSDSVAALIQHLDCCGESMEAANGLSEIDETEVSVDTKEDGPNHNYLATVNEDGRVVVGHLQAMDDPDEHIIDKMDIDDNADDNDDILEHLDEIGDIDIPKSEVEEEIEEVELRDERIKDENSSSETIDNETELIESESNGEITNFGGIDPLEEPADEEVAEEEQDETELVQVKQEICEVETEALYSCSSCSMSFNSVLSHIKEYHDGQEVVLEMAEQQMEDLPEEPHDFEAMVDDDQATNSSHEMKESSSIGERASVGSGTSGGVGLPRQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRGSAAATGAQSQLQQQQHQQATKSSPMIEKFFSNAEGLKIRAKSPGIPVTNSTIVGVVTSPTSTTTMSNNTTNAVENCNDNSARHQLRMYRCNKCLEQFVKLAEFRVHACIHGNNRCDLCDQAFASAKALQLHSRIHEVETEGGSDNNFVCQTCGTEFTSHKSLRLHSRMHAPVRARHVDAPEGTSNEIFTCLECGKTLSESYRKAHMALHKGDSVTCTVCNRKFDSADSLAMHAAVHLEFGNSQNHKFHQSTEDRKDDESNRDGLRSAKGKKNDKSGGGDAQEKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHTGQAVLATPEAAREEEVADADDFLITEETEEYEEIEEIEEIEEVEEEEEIKLAAVAAAAAAGDADADVHHTLNLIDAHEQSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -