Apic013652.1
Basic Information
- Insect
- Alloplasta piceator
- Gene Symbol
- -
- Assembly
- GCA_946863875.1
- Location
- OX333074.1:57913617-57918156[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.023 3 9.2 0.2 1 20 360 379 360 381 0.93 2 15 0.033 4.4 8.7 2.2 3 23 424 445 423 445 0.94 3 15 0.00024 0.031 15.4 0.3 1 23 451 473 451 473 0.98 4 15 5e-06 0.00066 20.7 2.6 1 23 479 501 479 501 0.96 5 15 0.00079 0.1 13.8 2.7 1 23 510 532 510 532 0.95 6 15 2.8e-06 0.00037 21.5 0.8 1 23 538 560 538 560 0.98 7 15 3.6e-06 0.00047 21.1 1.0 1 23 565 587 565 587 0.96 8 15 0.00075 0.099 13.8 4.0 1 23 594 616 594 616 0.99 9 15 0.0013 0.17 13.1 0.1 2 23 636 657 635 657 0.95 10 15 0.00013 0.017 16.2 0.8 1 23 664 687 664 687 0.97 11 15 0.00055 0.072 14.3 0.9 1 23 693 715 693 715 0.97 12 15 0.027 3.5 8.9 5.7 2 23 722 743 721 743 0.96 13 15 5.6e-06 0.00074 20.5 2.0 1 23 749 771 749 771 0.97 14 15 7.4e-07 9.7e-05 23.3 1.0 1 23 777 799 777 799 0.99 15 15 0.00065 0.086 14.0 2.4 2 23 805 826 804 826 0.96
Sequence Information
- Coding Sequence
- ATGAAAATTGTATGCTCAGCGGCATCATGCAAATATTCATCCGAAAGCCAAGATTCGTCGAACGTTATTTTCATAAGCTTTCCAAACAACAATACATCGGCTATATGGGCGGAAAATTGCGGCCGGCCAGATTTGCTCACGAAATCTGTGCATGATCTTCACACGAATCAGTATATATGTTCAGATCACATAGACGAAAATTTTTTCATCAGCAAAACAGATCCGATAATCATAGCGTCGGGAGCGATACCGACAATATTCGGAGAATCAAGAAATACCGTTGTATCAATGAACAGGCAAAAAAATGAAATGTCCTCCAACGGAATCGCGGATGCTCGAAAATTAATGGATCTTGATACAATCGACGAGTCCCGAAAAATTAATGTGGATTATCGGGAAACGATATTCAACGAGAAAGATAACTCGTTCGGATCAAATAATCTCGATTATTGCGATACGAGCTTCTGTAATTTCAATGGATCCTCCGTCGATATGACAAATTTGTGCCGTTTGTGCGGTCATCCGAGTCCCGAAGGAACGGACATTTTCACAGAACAAGGAACACAACTGAGACTGAGAGAAAAAATTTCATTGCACACGCCCGTATCGTTGGAAATGGAAGATTCGTTGCCGCGAAAAATTTGCCTCGAATGTTGCGAAAAATTAGAAGCCACTCACGCTTTTATCGTCGATTGTCTGCAGACGGATTTGAGATTAAGAAGATTCTTGAATATCAGTAGAAGTTCCGAATATGCCGACAAATACGCGGATTTGGTAACAGCTTGTACGATAAAAATTTCGAACGATTTGAATTTGGAAAAAAATCATACCTGGAAAAATTCTATCGACGTTCGGGAAAAAGCACCGATCGATGATTGTAAATGGAACGCATCGAGCGTTGAATTGGAAAAAGTCGAGATCCATCGAATAAACGGAACGAGCAATGAAAATTTCAAATACACCGAGAACACGGATTTGAATAATTTGCTCGAAGCTCTGGAAGACACGAACATGAGGATCAACGATAATAAAGAACAATCGTCGATTGTGTCTGCGGAAGTTGTAAAAAATTCACGATTTAGCTGTTCGCGCTGCACTAGCGTTTTTGAGACGAGAGAAACATTGGAGAATCACGAAATAACGTGTAATTCCGTACTGACGAAAAATCCAAACGGTCAAATTATCCGTACTGACGAAAGCAATGACGATCCGGAAAATCGTGAAATTTTCTACAACTTGAAATCTGCGAATATCTCGTCGAATCGACATTGCGGATATTGTCTTGCCGAATTTCCGACGCGAAAAGAATTACAAAATCACATTAACGATTGTCACGACGGTAAATCGCTTTTCAAGTGTCGAATGTGCGATAAAATTTATGAAAAATGGTCGAGCCTCGATGTTCACGAGGCGACACACAGAATCGACAAACCATATTTGTGCGATCTTTGCGGCAAGAGTTTCAAGCATTCGAACAATTTGCGGGGTCACAAGAGAATTCACCTCGACGACTCCAAGAAGAAACGTCACGCCTGTGATGCTTGTGGTAACGCTTTTCGATCGAGATTTCACCTTCGCGAACACATGAATCAGCACAATGGTAATAAGCCTTACGAGTGCGACGATTGTGGCAAAGCATTTTACAAGAGGATACAATTGCGACAGCATCGATTATCCCACGGTACGAACAAACATGCGTGTCCAATTTGTGGCGTTACGTTCAATCGCCGTGGGAATATGAATACTCATCTGAAGAGGCACAATAAAAACGAGGGAATGTACACATGTAGCGTTTGCGAGGAAAAATGCAAATCGATGAGCGAATTGAAGAGTCATCGCAAGCGACACACGGAGATTGAAATAATCAACAGCATAAGAAAGAAGGCTACGGACAAAAAAGCGTGGCAGTGTAAAATATGCGACAAGATATTTTCAAAGCGTGGAATTCTCGCGAATCACGAAGCGACGCACACGAACGATCGTGCGAGATTCGAGTGCGATATGTGCGGCAAAAATTTGGCGAACAAGAGTTCGTTGAGTTATCACAAGAAGTCATTGCACTCGTCCGAGCGTCCTCACATGTGTCAATACTGCGGGGAATCTTTCGTATCGAGAGAATCGCGTTTGATACACGAGAGAATACACACGGGTGAGCGTCCTTGCACGTGTGATATTTGCAAAATGCAATATCGTTGCTCGTCGAatctcagtcagcacatgaaggtccatctgtccgtgagacctcacaattgtcaatattgcaaaaagagtttcacgcgaaagggcgcgctcgtcgtgcacgagagaattcacaccggttacaagccctacgtttgcgagatatgcgaacgctcgttctcgcaaaaaaacgacatgatcaaacacacccgaacgcacgacgcgaaatttctacattgcgaaaaatgcaacgagagcttcgccACGAAGAACGATATATCGAAGCATTTAAATCGACACGAGGCGACGAACCTGAACGACAATGAAAGAATCAATGAATACTCGATTATATCTCAACAATCGAAATCGGATTCTACGAGCGTTCAGCAGGAAACTGTTGAACTGCAAATTGTACAAAATCAATTGAATCGTAAATAG
- Protein Sequence
- MKIVCSAASCKYSSESQDSSNVIFISFPNNNTSAIWAENCGRPDLLTKSVHDLHTNQYICSDHIDENFFISKTDPIIIASGAIPTIFGESRNTVVSMNRQKNEMSSNGIADARKLMDLDTIDESRKINVDYRETIFNEKDNSFGSNNLDYCDTSFCNFNGSSVDMTNLCRLCGHPSPEGTDIFTEQGTQLRLREKISLHTPVSLEMEDSLPRKICLECCEKLEATHAFIVDCLQTDLRLRRFLNISRSSEYADKYADLVTACTIKISNDLNLEKNHTWKNSIDVREKAPIDDCKWNASSVELEKVEIHRINGTSNENFKYTENTDLNNLLEALEDTNMRINDNKEQSSIVSAEVVKNSRFSCSRCTSVFETRETLENHEITCNSVLTKNPNGQIIRTDESNDDPENREIFYNLKSANISSNRHCGYCLAEFPTRKELQNHINDCHDGKSLFKCRMCDKIYEKWSSLDVHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRIHLDDSKKKRHACDACGNAFRSRFHLREHMNQHNGNKPYECDDCGKAFYKRIQLRQHRLSHGTNKHACPICGVTFNRRGNMNTHLKRHNKNEGMYTCSVCEEKCKSMSELKSHRKRHTEIEIINSIRKKATDKKAWQCKICDKIFSKRGILANHEATHTNDRARFECDMCGKNLANKSSLSYHKKSLHSSERPHMCQYCGESFVSRESRLIHERIHTGERPCTCDICKMQYRCSSNLSQHMKVHLSVRPHNCQYCKKSFTRKGALVVHERIHTGYKPYVCEICERSFSQKNDMIKHTRTHDAKFLHCEKCNESFATKNDISKHLNRHEATNLNDNERINEYSIISQQSKSDSTSVQQETVELQIVQNQLNRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -